We address biological questions by combining molecular biology and computational methods. Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. The results from the various approaches culminate in biotechnological applications.
Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Advanced Search

21 to 30 of 92 Results
Gzip Archive - 581.9 KB - MD5: e1f70deb48073ec1778e2d658d1d9f44
functional annotation
Gzip Archive - 9.7 MB - MD5: 2be0f192a0d6981ce049ad52f9bdd324
Gzip Archive - 111.9 MB - MD5: 4127ee7439a71c6c0c07f3d882f44e0c
genome sequence
Gzip Archive - 6.3 MB - MD5: b581e99bb7decd6653166fbb966570bf
Comma Separated Values - 50.4 KB - MD5: 6349019a3d9a25b2d52db69957243d10
List of BUSCO genes from eudictoyledons_odb12 lineage used for coalescence and concatenation-based species phylogeny
Comma Separated Values - 48.7 KB - MD5: 5e1581a14a019d45774fe557a1e12a8d
List of reference sequences used for phylogenetic trees
Gzip Archive - 5.8 MB - MD5: 76582297191abb036adfb1cd7d07c96c
Coding sequences used for constructing individual gene phylogenetic trees in FASTA format.
Comma Separated Values - 36.4 KB - MD5: 3e5fd89ec0b5c62d0b40ec9e8097a8ff
Sources of genomic and transcriptomic datasets used in the study
Gzip Archive - 1.1 GB - MD5: 1fa4521900ba3fbab3d589936a2c3849
Gene expression data of selected datasets used for expression analysis. File names are based on the plant species name. Each sub-folder contains the reference sequence (*.cds.fa & *.pep.fa), and a count table with the expression data (*.tpms.txt).
Comma Separated Values - 13.6 KB - MD5: 0d2e5292f31213e8b98d08d54fde165b
Links to websites used as reference for mapping fruit and flower colours used in Figure 2.
Add Data

Log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.