We address biological questions by combining molecular biology and computational methods. Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. The results from the various approaches culminate in biotechnological applications.
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21 to 30 of 99 Results
Jan 20, 2026
Vieira Salgado de Oliveira, Julie Anne; Pucker, Boas, 2026, "Tacca chantrieri genome sequence and annotation", https://doi.org/10.60507/FK2/6SOMER, bonndata, V1
Here we present high-quality genome sequence and annotation of Tacca chantrieri (commonly known as black bat flower), famous for its dark, bat-shaped flowers with long filaments, making it an exotic and unusual ornamental plant. Using ONT long-read sequencing data, highly continuous genome assemblies were generated. This data publication contains t...
Plain Text - 3.8 KB - MD5: bdc1aee41767de5a1340d04ed8972810
Gzip Archive - 8.5 MB - MD5: b26b5eb24eec3fc75c976f5a98832dc9
structural annotation
Gzip Archive - 581.9 KB - MD5: e1f70deb48073ec1778e2d658d1d9f44
functional annotation
Gzip Archive - 9.7 MB - MD5: 2be0f192a0d6981ce049ad52f9bdd324
Gzip Archive - 111.9 MB - MD5: 4127ee7439a71c6c0c07f3d882f44e0c
genome sequence
Gzip Archive - 6.3 MB - MD5: b581e99bb7decd6653166fbb966570bf
Dec 18, 2025
Choudhary, Nancy; Hagedorn, Marie; Pucker, Boas, 2025, "Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"", https://doi.org/10.60507/FK2/ZNVSLA, bonndata, V1
This dataset contains supplementary data supporting the manuscript "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae". In this large-scale phylogenomics study, we discovered the systemic absence of anthocyanin and proanthocyanidin biosynthesis genes in the Cucurbitaceae family. The structural genes DFR, ANS, arGST, LAR...
Comma Separated Values - 50.4 KB - MD5: 6349019a3d9a25b2d52db69957243d10
List of BUSCO genes from eudictoyledons_odb12 lineage used for coalescence and concatenation-based species phylogeny
Comma Separated Values - 48.7 KB - MD5: 5e1581a14a019d45774fe557a1e12a8d
List of reference sequences used for phylogenetic trees
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