We address biological questions by combining molecular biology and computational methods. Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. The results from the various approaches culminate in biotechnological applications.
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91 to 99 of 99 Results
Gzip Archive - 5.9 MB - MD5: 39ca19c8b59f574a734177b652d3942a
Contains the RNA-seq read mapping to Moringa oleifera LAR1 and LAR2 loci for promoter analysis.
Comma Separated Values - 2.6 KB - MD5: aec95a95e88bc3a58d15c54162a28f68
Synteny connections for LAR1 (indicated with *) across five plant species (Vitis vinifera, Theobroma cacao, Moringa oleifera, Carica papaya, and Bretschneidera sinensis). A dot (.) indicates absence of a corresponding syntenic gene in that species.
Comma Separated Values - 4.4 KB - MD5: 9c2f74bf6eec197ccc31233e1bdc7be8
Synteny connections for LAR1 in Brassicales (indicated with *), listing syntenic genes only among the Brassicales species: Moringa oleifera, Carica papaya, Bretschneidera sinensis, Capsella rubella, Boechera stricta, Arabidopsis thaliana, Arabidopsis halleri, Eutrema salsugineum, and Brassica rapa. A dot (.) indicates absence of a corresponding syn...
Comma Separated Values - 4.2 KB - MD5: f31c5523783b88d12c6a29d0a94682bd
Synteny connections for LAR2 (indicated with *) across five plant species (Vitis vinifera, Theobroma cacao, Moringa oleifera, Carica papaya, and Bretschneidera sinensis). A dot (.) indicates absence of a corresponding syntenic gene in that species.
Unknown - 404.9 KB - MD5: 482e4909f86ac25b7c526fd034982b45
Contains polypeptide sequences of LAR, ANR, and DFR.
Unknown - 724.9 KB - MD5: 3fbe7af9ad0629bf38b73770a76d90f0
Contains coding sequences (CDS) of LAR, ANR, and DFR.
Jul 22, 2025
Nowak, Melina Sophie; Harder, Benjamin; Meckoni, Samuel Nestor; Friedhoff, Ronja; Wolff, Katharina; Pucker, Boas, 2025, "Genome sequence and annotation of Victoria cruziana", https://doi.org/10.60507/FK2/5DS0JZ, bonndata, V1
The genome of a Victoria cruziana plant was sequenced with nanopore long reads. The genome sequence was assembled with Verkko2, scaffolding was conducted with CPhasing and the gene models were predicted by BRAKER3 and GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences.
Plain Text - 5.5 KB - MD5: a0e0115aace0787d4824afa79d4f4a0d
Gzip Archive - 1.1 GB - MD5: 47796d87218347dfcf56f5f4ec32dece
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