We address biological questions by combining molecular biology and computational methods. Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. The results from the various approaches culminate in biotechnological applications.
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Feb 3, 2026
Fischer, Victoria; Dassow, Chiara Marie; Pucker, Boas, 2026, "Begonia manicata genome sequence and annotation", https://doi.org/10.60507/FK2/MOR7FZ, bonndata, V1
Here, we present the genome sequence and annotation of Begonia manicata. Oxford Nanopore Technologies (ONT) long-read sequencing data were assembled to generate the genome sequence. Protein-encoding genes were predicted and functionally annotated.
Unknown - 56.8 MB - MD5: 6d98f71fa432dab33d29a2ad86334493
structural annotation
Plain Text - 2.7 MB - MD5: 6eb6792b7f7bf2e467172bc7dba94509
functional annotation
Unknown - 53.5 MB - MD5: c84b32392ee824fb9bd1763d6adb872c
CDS
Unknown - 573.9 MB - MD5: 51c974f5557e3c96f81839eadc19a790
genome sequence
Unknown - 18.3 MB - MD5: 77393a952d63e727b6e031c01c82cfe4
Plain Text - 3.4 MB - MD5: 8e2b3f629dec825b67a494d68cee7276
Plain Text - 4.2 KB - MD5: 668e885b6bca2c81792fa7c489d7c6d7
Jan 20, 2026
Vieira Salgado de Oliveira, Julie Anne; Friedhoff, Ronja; Katharina Wolff; Pucker, Boas, 2026, "Purple and White Aquilegia vulgaris genome sequence and annotation V2", https://doi.org/10.60507/FK2/GKLMOG, bonndata, V1
Here we present high-quality genome sequences and annotations of Aquilegia vulgaris (commonly known as columbine), a widespread ornamental plant renowned for its extensive flower color variation. The study uncovers the flavonoid biosynthesis gene repertoire underlying anthocyanin pigmentation in this species. Using ONT long-read sequencing data, hi...
Gzip Archive - 6.9 MB - MD5: f18485ff386be3efa11ca450a68c1930
purple structural annotation
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