We address biological questions by combining molecular biology and computational methods. Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. The results from the various approaches culminate in biotechnological applications.
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1 to 7 of 7 Results
Feb 3, 2026
Fischer, Victoria; Dassow, Chiara Marie; Pucker, Boas, 2026, "Begonia manicata genome sequence and annotation", https://doi.org/10.60507/FK2/MOR7FZ, bonndata, V1
Here, we present the genome sequence and annotation of Begonia manicata. Oxford Nanopore Technologies (ONT) long-read sequencing data were assembled to generate the genome sequence. Protein-encoding genes were predicted and functionally annotated.
Jan 20, 2026
Vieira Salgado de Oliveira, Julie Anne; Friedhoff, Ronja; Katharina Wolff; Pucker, Boas, 2026, "Purple and White Aquilegia vulgaris genome sequence and annotation V2", https://doi.org/10.60507/FK2/GKLMOG, bonndata, V1
Here we present high-quality genome sequences and annotations of Aquilegia vulgaris (commonly known as columbine), a widespread ornamental plant renowned for its extensive flower color variation. The study uncovers the flavonoid biosynthesis gene repertoire underlying anthocyanin pigmentation in this species. Using ONT long-read sequencing data, hi...
Jan 20, 2026
Vieira Salgado de Oliveira, Julie Anne; Pucker, Boas, 2026, "Tacca chantrieri genome sequence and annotation", https://doi.org/10.60507/FK2/6SOMER, bonndata, V1
Here we present high-quality genome sequence and annotation of Tacca chantrieri (commonly known as black bat flower), famous for its dark, bat-shaped flowers with long filaments, making it an exotic and unusual ornamental plant. Using ONT long-read sequencing data, highly continuous genome assemblies were generated. This data publication contains t...
Dec 18, 2025
Choudhary, Nancy; Hagedorn, Marie; Pucker, Boas, 2025, "Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"", https://doi.org/10.60507/FK2/ZNVSLA, bonndata, V1
This dataset contains supplementary data supporting the manuscript "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae". In this large-scale phylogenomics study, we discovered the systemic absence of anthocyanin and proanthocyanidin biosynthesis genes in the Cucurbitaceae family. The structural genes DFR, ANS, arGST, LAR...
Nov 10, 2025
Marín Recinos, María Fernanda; Pucker, Boas, 2025, "Supplementary data to Evolutionary Dynamics of the Proanthocyanidin Biosynthesis Gene LAR", https://doi.org/10.60507/FK2/UKAAO0, bonndata, V2
This dataset contains supplementary files associated with the manuscript "Evolutionary Dynamics of the Proanthocyanidin Biosynthesis Gene LAR", which investigates the evolutionary divergence, sequence variation, promoter motif composition, and coexpression patterns of LAR1 and LAR2 genes across multiple plant lineages. Supplementary materials inclu...
Oct 17, 2025
Horz, Jakob; Wolff, Katharina; Friedhoff, Ronja; Pucker, Boas, 2025, "Digitalis purpurea genome sequence and annotation V2", https://doi.org/10.60507/FK2/4KUKXI, bonndata, V1
Here we present a high-quality genome sequence and annotation of Digitalis purpurea (commonly known as foxglove), a plant valued both for its ornamental flowers and for producing the cardiac drug digoxin. The study aims to uncover the genetic basis of flower color variation in this species. Using ONT long-read sequencing data, we assembled the geno...
Jul 22, 2025
Nowak, Melina Sophie; Harder, Benjamin; Meckoni, Samuel Nestor; Friedhoff, Ronja; Wolff, Katharina; Pucker, Boas, 2025, "Genome sequence and annotation of Victoria cruziana", https://doi.org/10.60507/FK2/5DS0JZ, bonndata, V1
The genome of a Victoria cruziana plant was sequenced with nanopore long reads. The genome sequence was assembled with Verkko2, scaffolding was conducted with CPhasing and the gene models were predicted by BRAKER3 and GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences.
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