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bonndata is the institutional, cross-disciplinary research data repository for the publication of research data for all researchers at the University of Bonn.
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111 to 120 of 4,969 Results

Bait_sequences_gene_trees.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 48.7 KB - MD5: 5e1581a14a019d45774fe557a1e12a8d List of reference sequences used for phylogenetic trees
Coding_seq_gene_trees_dataset.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 5.8 MB - MD5: 76582297191abb036adfb1cd7d07c96c Coding sequences used for constructing individual gene phylogenetic trees in FASTA format.
Dataset_sources.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 36.4 KB - MD5: 3e5fd89ec0b5c62d0b40ec9e8097a8ff Sources of genomic and transcriptomic datasets used in the study
Expression_datasets.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 1.1 GB - MD5: 1fa4521900ba3fbab3d589936a2c3849 Gene expression data of selected datasets used for expression analysis. File names are based on the plant species name. Each sub-folder contains the reference sequence (.cds.fa & .pep.fa), and a count table with the expression data (*.tpms.txt).
Fruit_flower_colour_sources.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 13.6 KB - MD5: 0d2e5292f31213e8b98d08d54fde165b Links to websites used as reference for mapping fruit and flower colours used in Figure 2.
Gene_Annotation_dataset.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 2.0 GB - MD5: 7b79b7bf905e7e72c5b234a3968b2971 Structural annotation of various datasets generated in the study using GeMoMa v1.9. Each subfolder contains the structural annotations in GFF3 (.gff3) format, predicted coding sequences as FASTA file (.cds.fa), and the predicted polypeptide sequences as FASTA file (.pep.fa) for the corresponding dataset. File names are based on the plant species na...
Gene_annotation_stats.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 7.5 KB - MD5: 8b6e314c149aa413049e66e977c863cb Statistics of gene annotation of 82 species and re-annotation of 7 species
Kraken_classification.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 34.6 KB - MD5: d03c4330afa93ae046f183653f66d1c6 Detailed results of Kraken and Bracken classification of all datasets
README.txt Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Plain Text - 17.0 KB - MD5: 09efa63aa55dec812e8d28aa1037efac README file describing the datasets and files overview
Corinthian Black-Figure Bowl in the Academic Art Museum Bonn (Inv. 1674) Dec 12, 2025 - Akademisches Kunstmuseum Lang, Matthias, 2024, "Corinthian Black-Figure Bowl in the Academic Art Museum Bonn (Inv. 1674)", https://doi.org/10.60507/FK2/CIXJA0, bonndata, V3 The bowl is dated around 575 BC and, together with other vessels of the same group, belongs to the heyday of the archaic pottery production in Corinth. Its findspot is not known. The very thin-walled vessel has a low foot, a bulbous body, a sharply set off rim and horizontally attached handles. The body shows a circumferential frieze with groups of...

Bait_sequences_gene_trees.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 48.7 KB -

List of reference sequences used for phylogenetic trees

Coding_seq_gene_trees_dataset.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 5.8 MB -

Coding sequences used for constructing individual gene phylogenetic trees in FASTA format.

Dataset_sources.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 36.4 KB -

Sources of genomic and transcriptomic datasets used in the study

Expression_datasets.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 1.1 GB -

Gene expression data of selected datasets used for expression analysis. File names are based on the plant species name. Each sub-folder contains the reference sequence (*.cds.fa & *.pep.fa), and a count table with the expression data (*.tpms.txt).

Fruit_flower_colour_sources.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 13.6 KB -

Links to websites used as reference for mapping fruit and flower colours used in Figure 2.

Gene_Annotation_dataset.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 2.0 GB -

Structural annotation of various datasets generated in the study using GeMoMa v1.9. Each subfolder contains the structural annotations in GFF3 (.gff3) format, predicted coding sequences as FASTA file (.cds.fa), and the predicted polypeptide sequences as FASTA file (.pep.fa) for the corresponding dataset. File names are based on the plant species na...

Gene_annotation_stats.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 7.5 KB -

Statistics of gene annotation of 82 species and re-annotation of 7 species

Kraken_classification.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 34.6 KB -

Detailed results of Kraken and Bracken classification of all datasets

README.txt

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Plain Text - 17.0 KB -

README file describing the datasets and files overview

Corinthian Black-Figure Bowl in the Academic Art Museum Bonn (Inv. 1674)

Dec 12, 2025 - Akademisches Kunstmuseum

Lang, Matthias, 2024, "Corinthian Black-Figure Bowl in the Academic Art Museum Bonn (Inv. 1674)", https://doi.org/10.60507/FK2/CIXJA0, bonndata, V3

The bowl is dated around 575 BC and, together with other vessels of the same group, belongs to the heyday of the archaic pottery production in Corinth. Its findspot is not known. The very thin-walled vessel has a low foot, a bulbous body, a sharply set off rim and horizontally attached handles. The body shows a circumferential frieze with groups of...

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