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291 to 300 of 4,833 Results

ReadMe.txt Dec 19, 2025 - Data for modelling policy decisions to mitigate risk of emerging arboviral diseases under ecological change in Uganda Plain Text - 6.2 KB - MD5: ec68371c088ba9232299614deb18777e Meta data file
BUSCO_genes_for_species_phylogeny.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 50.4 KB - MD5: 6349019a3d9a25b2d52db69957243d10 List of BUSCO genes from eudictoyledons_odb12 lineage used for coalescence and concatenation-based species phylogeny
Bait_sequences_gene_trees.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 48.7 KB - MD5: 5e1581a14a019d45774fe557a1e12a8d List of reference sequences used for phylogenetic trees
Coding_seq_gene_trees_dataset.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 5.8 MB - MD5: 76582297191abb036adfb1cd7d07c96c Coding sequences used for constructing individual gene phylogenetic trees in FASTA format.
Dataset_sources.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 36.4 KB - MD5: 3e5fd89ec0b5c62d0b40ec9e8097a8ff Sources of genomic and transcriptomic datasets used in the study
Expression_datasets.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 1.1 GB - MD5: 1fa4521900ba3fbab3d589936a2c3849 Gene expression data of selected datasets used for expression analysis. File names are based on the plant species name. Each sub-folder contains the reference sequence (.cds.fa & .pep.fa), and a count table with the expression data (*.tpms.txt).
Fruit_flower_colour_sources.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 13.6 KB - MD5: 0d2e5292f31213e8b98d08d54fde165b Links to websites used as reference for mapping fruit and flower colours used in Figure 2.
Gene_Annotation_dataset.tar.gz Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Gzip Archive - 2.0 GB - MD5: 7b79b7bf905e7e72c5b234a3968b2971 Structural annotation of various datasets generated in the study using GeMoMa v1.9. Each subfolder contains the structural annotations in GFF3 (.gff3) format, predicted coding sequences as FASTA file (.cds.fa), and the predicted polypeptide sequences as FASTA file (.pep.fa) for the corresponding dataset. File names are based on the plant species na...
Gene_annotation_stats.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 7.5 KB - MD5: 8b6e314c149aa413049e66e977c863cb Statistics of gene annotation of 82 species and re-annotation of 7 species
Kraken_classification.csv Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" Comma Separated Values - 34.6 KB - MD5: d03c4330afa93ae046f183653f66d1c6 Detailed results of Kraken and Bracken classification of all datasets

ReadMe.txt

Dec 19, 2025 - Data for modelling policy decisions to mitigate risk of emerging arboviral diseases under ecological change in Uganda

Plain Text - 6.2 KB -

Meta data file

BUSCO_genes_for_species_phylogeny.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 50.4 KB -

List of BUSCO genes from eudictoyledons_odb12 lineage used for coalescence and concatenation-based species phylogeny

Bait_sequences_gene_trees.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 48.7 KB -

List of reference sequences used for phylogenetic trees

Coding_seq_gene_trees_dataset.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 5.8 MB -

Coding sequences used for constructing individual gene phylogenetic trees in FASTA format.

Dataset_sources.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 36.4 KB -

Sources of genomic and transcriptomic datasets used in the study

Expression_datasets.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 1.1 GB -

Gene expression data of selected datasets used for expression analysis. File names are based on the plant species name. Each sub-folder contains the reference sequence (*.cds.fa & *.pep.fa), and a count table with the expression data (*.tpms.txt).

Fruit_flower_colour_sources.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 13.6 KB -

Links to websites used as reference for mapping fruit and flower colours used in Figure 2.

Gene_Annotation_dataset.tar.gz

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Gzip Archive - 2.0 GB -

Structural annotation of various datasets generated in the study using GeMoMa v1.9. Each subfolder contains the structural annotations in GFF3 (.gff3) format, predicted coding sequences as FASTA file (.cds.fa), and the predicted polypeptide sequences as FASTA file (.pep.fa) for the corresponding dataset. File names are based on the plant species na...

Gene_annotation_stats.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 7.5 KB -

Statistics of gene annotation of 82 species and re-annotation of 7 species

Kraken_classification.csv

Dec 18, 2025 - Supplementary data supporting the study: "Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae"

Comma Separated Values - 34.6 KB -

Detailed results of Kraken and Bracken classification of all datasets

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