This file was generated on 2025-01-23 by Einar Baldvin Haraldsson


A GENERAL INFORMATION

1. Title of the dataset: Supplementary information: Hordeum erectifolium, a physiological and genomic study of drought-adaptive traits

2. Brief description of the research project and its aims: Supplementary dataset of a dissertation for the award of the doctoral degree (Dr. rer. nat.)

3. Author Information
	A. Investigator Contact Information
		Name: Einar Baldvin Haraldsson
		Institution: Institute of Plant Genetics, HHU Düsseldorf
		Address: Universitätsstraße 1, 40225 Düsseldorf
		Email: einar.haraldsson@hhu.de

	B. Project Supervisor (Principal Investigator) Contact Information
		Name: Prof. Dr. Maria von Korff Schmising 
		Institution: Institute of Plant Genetics, HHU Düsseldorf
		Address: Universitätsstraße 1, 40225 Düsseldorf
		Email: maria.korff.schmising@hhu.de

	C. In case of questions related to this dataset, please contact:
		Name: Prof. Dr. Maria von Korff Schmising 
		Institution: Institute of Plant Genetics, HHU Düsseldorf
		Address: Universitätsstraße 1, 40225 Düsseldorf
		Email: maria.korff.schmising@hhu.de

4. Date of data collection: From 2021-06-20 until 2024-11-07

5. Information about funding sources that supported the collection of the data: 
GRK 2064: Water use efficiency and drought stress responses: From Arabidopsis to Barley. Deutsche Forschungsgemeinschaft (DFG) - Projektnummer 252965955
PERLIFE: Engineering perennial barley, DOI:10.3030/101002085, EXCELLENT SCIENCE - European Research Council (ERC) - Grant agreement ID: 101002085 

6. Language of the dataset: English


B DATA & FILE OVERVIEW

1. File List: 

S1_Sequencing_data.xlsx : Raw metrics of all DNA and RNA sequencing data.
S2_Assembly_stats_scaffolding.xlsx: Metrics of each genome assembly steps, from draft to final assembly.
S3_Polishing_Merqury.xlsx: Statistics for each polishing step of the assembled genome.
S4_Herectifolium_NGB6816_ONT_Gene.Annotation.stats.xlsx: Gene annotation metrics for the genome.
S5_EDTA.xlsx: Summary of transposable elements annotated with The Extensive de novo TE Annotator (EDTA) in the assembled genome and re-annotated in two previously published Hordeum vulgare (barley) genomes.
S6_DEGs_pairwise_and_timeseries_r0.7.xlsx: Differentially expressed genes found in H. erectifolium and Hordeum vulgare cv. Morex during drought treatment.
S7_HOGs_CAFE5_analysis.xlsx: Expanded or reduced Phylogenetic Hierarchical Orthogroups analysed by Computational Analysis of gene Family Evolution (CAFE).
S8_Single_copy_DEG_orthologs.xlsx: List of cross-species putative single copy orthologs found among the differentially expressed genes of H. erectifolium and Hordeum vulgare cv. Morex during drought treatment.
S9_Expressed_SWEETs_PacBio_IsoSeq.xlsx: Tissue specific expression of annotated SWEET genes.

2. Are there multiple versions of the dataset? No


C SHARING/ACCESS INFORMATION

1. Was data derived from another source? yes/no: No

2. Licenses/restrictions placed on the data: Creative Commons CC-BY-4.0 International License

3. Links to publications that cite or use the data: https://nbn-resolving.org/urn:nbn:de:hbz:5-80348


D METHODOLOGICAL INFORMATION

1. Description of methods used for collection/generation of data: 
Detailed description of data collection and generation found in main publication: Hordeum erectifolium, a physiological and genomic study of drought-adaptive traits - https://nbn-resolving.org/urn:nbn:de:hbz:5-80348

2. Methods for processing the data: 
Detailed description of data collection and generation found in main publication: Hordeum erectifolium, a physiological and genomic study of drought-adaptive traits - https://nbn-resolving.org/urn:nbn:de:hbz:5-80348

3. Instrument- and/or software-specific information needed to interpret the data: 
Any program capable of opening XSLX files.

4. People involved in sample collection, processing, analysis and/or submission: 
Einar Baldvin Haraldsson


E DATA-SPECIFIC INFORMATION FOR: All tables
Detailed description of data collection and generation found in main publication: Hordeum erectifolium, a physiological and genomic study of drought-adaptive traits - https://nbn-resolving.org/urn:nbn:de:hbz:5-80348

1. Variable list including full names and definitions (please spell out abbreviated words) of column headings for tabular data: 
All data descriptors are found as column or row headers in the tables.