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Part 1: Document Description
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Citation |
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Title: |
Theobroma cacao: Genome Sequences and Annotations |
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Identification Number: |
doi:10.60507/FK2/YQDFT4 |
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Distributor: |
bonndata |
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Date of Distribution: |
2026-08-25 |
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Version: |
1 |
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Bibliographic Citation: |
Marín Recinos, María Fernanda; Ajayi, Blessing; Wolff, Katharina; Choudhary, Nancy; Vieira Salgado de Oliveira, Julie Anne; Pucker, Boas, 2026, "Theobroma cacao: Genome Sequences and Annotations", https://doi.org/10.60507/FK2/YQDFT4, bonndata, V1 |
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Citation |
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Title: |
Theobroma cacao: Genome Sequences and Annotations |
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Identification Number: |
doi:10.60507/FK2/YQDFT4 |
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Authoring Entity: |
Marín Recinos, María Fernanda (University of Bonn) |
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Ajayi, Blessing (University of Bonn) |
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Wolff, Katharina (University of Bonn) |
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Choudhary, Nancy (University of Bonn) |
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Vieira Salgado de Oliveira, Julie Anne (University of Bonn) |
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Pucker, Boas (University of Bonn) |
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Distributor: |
bonndata |
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Depositor: |
Marin Recinos, Maria |
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Date of Deposit: |
2026-08-21 |
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Holdings Information: |
https://doi.org/10.60507/FK2/YQDFT4 |
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Study Scope |
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Keywords: |
Agricultural Sciences, Medicine, Health and Life Sciences, Other |
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Abstract: |
The genomes of two Theobroma cacao plants were sequenced with Nanopore long reads. The genome sequence was assembled with hifiasm and the gene models were predicted by GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0</a> |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Cacao genome sequence reveals insights into the flavonoid biosynthesis Maria Fernanda Marin Recinos, Sarah Winnier, Kiersten Lagerhausen, Blessing Ajayi, Katharina Wolff, Ronja Friedhoff, Chiara Marie Dassow, Nancy Choudhary, Boas Pucker bioRxiv 2024.11.23.624982; |
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Bibliographic Citation: |
Cacao genome sequence reveals insights into the flavonoid biosynthesis Maria Fernanda Marin Recinos, Sarah Winnier, Kiersten Lagerhausen, Blessing Ajayi, Katharina Wolff, Ronja Friedhoff, Chiara Marie Dassow, Nancy Choudhary, Boas Pucker bioRxiv 2024.11.23.624982; |
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Label: |
README_Tcacao.md |
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Notes: |
text/markdown |
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Label: |
Tcacao_BONN1.v01.asm.fasta.gz |
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Notes: |
application/gzip |
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Label: |
Tcacao_BONN1.v01.v01.cds.fasta |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BONN1.v01.v01.gff |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BONN1.v01.v01.pep.fasta |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BONN1_annot.v01.v01.txt |
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Notes: |
text/plain |
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Label: |
Tcacao_BRAU1.v01.asm.fasta.gz |
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Notes: |
application/gzip |
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Label: |
Tcacao_BRAU1.v01.v01.cds.fasta |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BRAU1.v01.v01.gff |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BRAU1.v01.v01.pep.fasta |
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Notes: |
application/octet-stream |
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Label: |
Tcacao_BRAU1_annot.v01.v01.txt |
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Notes: |
text/plain |