10.60507/FK2/YQDFT4 Marín Recinos, María Fernanda María Fernanda Marín Recinos https://orcid.org/0000-0001-5575-1264 University of Bonn Ajayi, Blessing Blessing Ajayi https://orcid.org/0009-0005-4753-8769 Wolff, Katharina Katharina Wolff https://orcid.org/0000-0002-3616-0482 University of Bonn Choudhary, Nancy Nancy Choudhary https://orcid.org/0000-0002-2562-7905 University of Bonn Vieira Salgado de Oliveira, Julie Anne Julie Anne Vieira Salgado de Oliveira https://orcid.org/0000-0001-9930-6373 University of Bonn Pucker, Boas Boas Pucker https://orcid.org/0000-0002-3321-7471 University of Bonn bonndata 2026 Agricultural Sciences Medicine, Health and Life Sciences Other 2026-08-21 2026-08-25 10.1101/2024.11.23.624982 10.60507/FK2/YQDFT4/QICWZH 10.60507/FK2/YQDFT4/JUKXXQ 10.60507/FK2/YQDFT4/CGLHHH 10.60507/FK2/YQDFT4/Q8ZVHI 10.60507/FK2/YQDFT4/16FBNK 10.60507/FK2/YQDFT4/6UAUBC 10.60507/FK2/YQDFT4/R569Q2 10.60507/FK2/YQDFT4/ECBQBM 10.60507/FK2/YQDFT4/XPSSUU 10.60507/FK2/YQDFT4/E1P0WO 10.60507/FK2/YQDFT4/R3KQGP 72715236 33061999 78030303 2700143 57219328 24834670 102227370 102043785 3495719 97064527 9037 application/octet-stream application/octet-stream application/octet-stream text/plain application/octet-stream application/octet-stream application/gzip application/gzip text/plain application/octet-stream text/markdown 1.0 Creative Commons Attribution 4.0 International License. The genomes of two Theobroma cacao plants were sequenced with Nanopore long reads. The genome sequence was assembled with hifiasm and the gene models were predicted by GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences.