Valeriana officinalis genome sequence and annotation V1

Name: Valeriana officinalis genome sequence and annotation V1
Published: 2026-08-18
License: http://creativecommons.org/licenses/by/4.0

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Important usage condition: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

Persistent identifier: doi:10.60507/FK2/TQZVWU
Published version: 1.0
Publication date: 2026-08-18
License: CC BY 4.0

Description

Here we present the first genome sequence and annotation of Valeriana officinalis (commonly known as valerian), a widespread perennial plant widely used as a herbal remedy. Using ONT long-read sequencing data, a highly continuous genome assembly was generated for V. officinalis. This study uncovers the flavonoid biosynthesis gene repertoire and numerous terpene synthase candidate genes in this species. This data publication contains the genome sequences with corresponding annotations.

Creators

Vieira Salgado de Oliveira, Julie Anne
Baez, Mariana Alejandra
Pucker, Boas

Keywords

valerian, biosynthesis pathway, terpene synthase, medicinal plant

Files

Before downloading: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

File	Type	Bytes	Checksum
Valeriana_officinalis.genomic.fasta.gz	application/gzip	822329577	MD5 4901f8a030ed515b3ac3172e5db3aeff
Valeriana_officinalis.pep.fasta.gz	application/gzip	20888935	MD5 3c45bf8a726c3838464d680b0db7047b
Valeriana_officinalis.cds.fasta.gz	application/gzip	31984320	MD5 45cc9fa3a93143f4bcc9dd41da1194cf
Valeriana_officinalis.anno.txt.gz	application/gzip	151123	MD5 f392895ed32ca2e884d2383c0bbd3ca7
Valeriana_officinalis.anno.gff.gz	application/gzip	19208454	MD5 11508dbc56970e062e5a216431999f25
README.txt	text/plain	4918	MD5 778e89fab0d7b78a39aae5a6d8b5ce6d

Citation

Vieira Salgado de Oliveira, Julie Anne; Baez, Mariana Alejandra; Pucker, Boas, 2026-08-18, Valeriana officinalis genome sequence and annotation V1, doi:10.60507/FK2/TQZVWU, V1.0

Additional Dataverse fields

Id	803
Dataset Type	dataset
Internal Version Number	12
Latest Version Publishing State	RELEASED
Release Time	2026-08-18T10:25:46Z
Create Time	2026-07-31T14:56:55Z
Citation Date	2026-08-18
File Access Request	True

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Static metadata exports available for this published dataset version:

Complete Dataverse metadata

Citation Metadata

Title title

Valeriana officinalis genome sequence and annotation V1

Author author

Author Name
Vieira Salgado de Oliveira, Julie Anne
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0001-9930-6373
Expandedvalue
Person Name
Vieira Salgado de Oliveira, Julie Anne
@id
https://orcid.org/0000-0001-9930-6373
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Baez, Mariana Alejandra
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0002-7874-6385
Expandedvalue
Person Name
Baez, Mariana Alejandra
@id
https://orcid.org/0000-0002-7874-6385
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Pucker, Boas
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0002-3321-7471
Expandedvalue
Person Name
Pucker, Boas
@id
https://orcid.org/0000-0002-3321-7471
Scheme
ORCID
@type
https://schema.org/Person

Dataset Contact datasetContact

Dataset Contact Name
Pucker, Boas
Dataset Contact Affiliation
University of Bonn
Dataset Contact Email
pucker@uni-bonn.de

Ds Description dsDescription

Ds Description Value
Here we present the first genome sequence and annotation of Valeriana officinalis (commonly known as valerian), a widespread perennial plant widely used as a herbal remedy. Using ONT long-read sequencing data, a highly continuous genome assembly was generated for V. officinalis. This study uncovers the flavonoid biosynthesis gene repertoire and numerous terpene synthase candidate genes in this species. This data publication contains the genome sequences with corresponding annotations.
Ds Description Date
2026-07-31

Subject subject

Medicine, Health and Life Sciences

Subject Refinement subjectRefinement

Subject Refinement Value
Plant Sciences [202]

Free Keyword freeKeyword

Free Keyword Value
valerian
Free Keyword Value
biosynthesis pathway
Free Keyword Value
terpene synthase
Free Keyword Value
medicinal plant

Language language

English

Grant Number grantNumber

Grant Number Agency
German Network for Bioinformatics Infrastructure (de.NBI)
Grant Number Agency
ELIXIR-DE: Forschungszentrum Jülich
Grant Number Agency
W-de.NBI-001, W-de.NBI-004, W-de.NBI-008, W-de.NBI-010, W-de.NBI-013, W-de.NBI-014, W-de.NBI-016, W-de.NBI-022

Depositor depositor

Vieira Salgado de Oliveira, Julie Anne

Date Of Deposit dateOfDeposit

2026-07-31

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