Rubus armeniacus genome sequence and annotation

Name: Rubus armeniacus genome sequence and annotation
Published: 2026-05-05
License: http://creativecommons.org/licenses/by/4.0

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Important usage condition: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

Persistent identifier: doi:10.60507/FK2/L7LG2L
Published version: 1.0
Publication date: 2026-05-05
License: CC BY 4.0

Description

Here, we present the genome sequence and annotation of Rubus armeniacus. Oxford Nanopore Technologies (ONT) long-read sequencing data were assembled to generate the genome sequence. Protein-coding genes were predicted and functionally annotated.

Creators

Pucker, Boas
Wolff, Katharina

Keywords

blackberry, anthocyanins

Files

Before downloading: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

File	Type	Bytes	Checksum
Rubus_armeniacus.hapD.fasta.gz	application/gzip	82075749	MD5 a8b148a1945df56e5440ef8f70af3e16
Rubus_armeniacus.fun.anno.txt.gz	application/gzip	165281673	MD5 c4b0b747a094209f2298ecccbcb9cf47
Rubus_armeniacus.hapA.fasta.gz	application/gzip	99226700	MD5 022b619137fec544ee89dbab6f92ec84
Rubus_armeniacus.pep.fasta.gz	application/gzip	6916777	MD5 6054d70e69b7a0a3023ef5517590d21d
Rubus_armeniacus.ann.gff.gz	application/gzip	13547707	MD5 a0a62a7478862a9b135cf2b3d2c65d4f
Rubus_armeniacus.cds.fasta.gz	application/gzip	10428462	MD5 ffcd7aecae860a6528f9eca540368d75
Rubus_armeniacus.anno.txt.gz	application/gzip	1593933	MD5 b7213cf73dbeb950cfa4a7918a05d14a
Rubus_armeniacus.genome.fasta.gz	application/gzip	330182283	MD5 baa20936d257e9c223f8a41991970ec4
Rubus_armeniacus.hapC.fasta.gz	application/gzip	91578991	MD5 8c52c4f238857682f4ef658344aa52c8
Rubus_armeniacus.hapB.fasta.gz	application/gzip	93942496	MD5 943f230d7e5964a68229da5dd6793171
Rubus_armeniacus.tpms.tsv.gz	application/gzip	8819759	MD5 d0103ae6c4275211ebe13f769dd1ba8e
README.txt	text/plain	4988	MD5 8948def3e04de95c105510954063c74a

Citation

Pucker, Boas; Wolff, Katharina, 2026-05-05, Rubus armeniacus genome sequence and annotation, doi:10.60507/FK2/L7LG2L, V1.0

Additional Dataverse fields

Id	729
Dataset Type	dataset
Internal Version Number	9
Latest Version Publishing State	RELEASED
Release Time	2026-05-05T19:36:08Z
Create Time	2026-04-28T15:23:36Z
Citation Date	2026-05-05
File Access Request	True

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Complete Dataverse metadata

Citation Metadata

Title title

Rubus armeniacus genome sequence and annotation

Author author

Author Name
Pucker, Boas
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0002-3321-7471
Expandedvalue
Person Name
Pucker, Boas
@id
https://orcid.org/0000-0002-3321-7471
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Wolff, Katharina
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0002-3616-0482
Expandedvalue
Person Name
Wolff, Katharina
@id
https://orcid.org/0000-0002-3616-0482
Scheme
ORCID
@type
https://schema.org/Person

Dataset Contact datasetContact

Dataset Contact Name
Pucker, Boas
Dataset Contact Affiliation
University of Bonn
Dataset Contact Email
pucker@uni-bonn.de

Ds Description dsDescription

Ds Description Value
Here, we present the genome sequence and annotation of Rubus armeniacus. Oxford Nanopore Technologies (ONT) long-read sequencing data were assembled to generate the genome sequence. Protein-coding genes were predicted and functionally annotated.

Subject subject

Medicine, Health and Life Sciences

Free Keyword freeKeyword

Free Keyword Value
blackberry
Free Keyword Value
anthocyanins

Language language

English

Depositor depositor

Pucker, Boas

Date Of Deposit dateOfDeposit

2026-04-28

Date Of Collection dateOfCollection

Date Of Collection Start
2024
Date Of Collection End
2026

Computational Workflow Metadata

Workflow Documentation workflowDocumentation

The genome sequence was assembled with Shasta and the gene models were predicted by GeMoMa v1.9 and BRAKER3. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences, as well as the tool funannotate utilizing InterProScan5 and Pfam as a database.

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