Purple and White Aquilegia vulgaris genome sequence and annotation V2
type: Dataset
creator: Vieira Salgado de Oliveira, Julie Anne
creator: Friedhoff, Ronja
creator: Katharina Wolff
creator: Pucker, Boas
author: Vieira Salgado de Oliveira, Julie Anne
author: Friedhoff, Ronja
author: Katharina Wolff
author: Pucker, Boas
date published: 2026-01-20
date modified: 2026-01-20
version: 1
description: Here we present high-quality genome sequences and annotations of Aquilegia vulgaris (commonly known as columbine), a widespread ornamental plant renowned for its extensive flower color variation. The study uncovers the flavonoid biosynthesis gene repertoire underlying anthocyanin pigmentation in this species. Using ONT long-read sequencing data, highly continuous genome assemblies were generated for both a purple-flowering and a white-flowering A. vulgaris. This data publication contains the genome sequences with corresponding structural annotations.
keywords: Medicine, Health and Life Sciences
citation: https://doi.org/10.1101/2024.12.16.628782
license: http://creativecommons.org/licenses/by/4.0
included in data catalog: bonndata
publisher: bonndata
provider: bonndata
funder: German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE
distribution: Aquilegia_vulgaris_purple.anno.gff.gz
distribution: Aquilegia_vulgaris_purple.anno.txt.gz
distribution: Aquilegia_vulgaris_purple.cds.fasta.gz
distribution: Aquilegia_vulgaris_purple.genomic.fasta.gz
distribution: Aquilegia_vulgaris_purple.pep.fasta.gz
distribution: Aquilegia_vulgaris_white.anno.gff.gz
distribution: Aquilegia_vulgaris_white.anno.txt.gz
distribution: Aquilegia_vulgaris_white.cds.fasta.gz
distribution: Aquilegia_vulgaris_white.genomic.fasta.gz
distribution: Aquilegia_vulgaris_white.pep.fasta.gz
distribution: README.txt

Vieira Salgado de Oliveira, Julie Anne
type: Person
given name: Julie Anne
family name: Vieira Salgado de Oliveira
affiliation: University of Bonn

Friedhoff, Ronja
type: Person
given name: Ronja
family name: Friedhoff
affiliation: TU Braunschweig

Katharina Wolff
type: Person
given name: Katharina
family name: Wolff
affiliation: University of Bonn

Pucker, Boas
type: Person
given name: Boas
family name: Pucker
affiliation: University of Bonn

https://doi.org/10.1101/2024.12.16.628782
type: CreativeWork
name: de Oliveira, J. A. V. S., Friedhoff R., Wolff K., Pucker B. (2024). Genome sequence of the ornamental plant Aquilegia vulgaris reveals the flavonoid biosynthesis gene repertoire. bioRxiv 2024.12.16.628782; doi: 10.1101/2024.12.16.628782

Aquilegia_vulgaris_purple.anno.gff.gz
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content size: 7272523
description: purple structural annotation

Aquilegia_vulgaris_purple.anno.txt.gz
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content size: 618123
description: purple functional annotation

Aquilegia_vulgaris_purple.cds.fasta.gz
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content size: 9898794
description: CDS

Aquilegia_vulgaris_purple.genomic.fasta.gz
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content size: 91246714
description: Purple genome sequence

Aquilegia_vulgaris_purple.pep.fasta.gz
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content size: 6529281

Aquilegia_vulgaris_white.anno.gff.gz
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description: white structural annotation

Aquilegia_vulgaris_white.anno.txt.gz
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content size: 594872
description: white functional annotation

Aquilegia_vulgaris_white.cds.fasta.gz
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content size: 11153644
description: CDS

Aquilegia_vulgaris_white.genomic.fasta.gz
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content size: 78494074
description: White genome sequence

Aquilegia_vulgaris_white.pep.fasta.gz
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README.txt
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encoding format: text/plain
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