{"dcterms:modified":"2026-01-20","dcterms:creator":"bonndata","@type":"ore:ResourceMap","schema:additionalType":"Dataverse OREMap Format v1.0.1","dvcore:generatedBy":{"@type":"schema:SoftwareApplication","schema:name":"Dataverse","schema:version":"6.7.1 build 1955-8e18f64","schema:url":"https://github.com/iqss/dataverse"},"@id":"https://bonndata.uni-bonn.de/catalog/datasets/10.60507/FK2/GKLMOG/exportformat/oai-ore.json","ore:describes":{"title":"Purple and White Aquilegia vulgaris genome sequence and annotation V2","author":[{"citation:authorName":"Vieira Salgado de Oliveira, Julie Anne","citation:authorAffiliation":"University of Bonn","authorIdentifierScheme":"ORCID","authorIdentifier":{"personName":"Vieira Salgado de Oliveira, Julie Anne","@id":"https://orcid.org/0000-0001-9930-6373","scheme":"ORCID","@type":"https://schema.org/Person"}},{"citation:authorName":"Friedhoff, Ronja","citation:authorAffiliation":"TU Braunschweig","authorIdentifierScheme":"ORCID","authorIdentifier":{"personName":"Friedhoff, Ronja","@id":"https://orcid.org/0009-0002-0270-4661","scheme":"ORCID","@type":"https://schema.org/Person"}},{"citation:authorName":"Katharina Wolff","citation:authorAffiliation":"University of Bonn","authorIdentifierScheme":"ORCID","authorIdentifier":"0000-0002-3616-0482"},{"citation:authorName":"Pucker, Boas","citation:authorAffiliation":"University of Bonn","authorIdentifierScheme":"ORCID","authorIdentifier":{"personName":"Pucker, Boas","@id":"https://orcid.org/0000-0002-3321-7471","scheme":"ORCID","@type":"https://schema.org/Person"}}],"citation:datasetContact":{"citation:datasetContactName":"Boas Pucker","citation:datasetContactAffiliation":"University of Bonn","citation:datasetContactEmail":"pucker@uni-bonn.de"},"citation:dsDescription":{"citation:dsDescriptionValue":"Here we present high-quality genome sequences and annotations of Aquilegia vulgaris (commonly known as columbine), a widespread ornamental plant renowned for its extensive flower color variation. The study uncovers the flavonoid biosynthesis gene repertoire underlying anthocyanin pigmentation in this species. Using ONT long-read sequencing data, highly continuous genome assemblies were generated for both a purple-flowering and a white-flowering A. vulgaris. This data publication contains the genome sequences with corresponding structural annotations.","citation:dsDescriptionDate":"2025-07-10"},"subject":"Medicine, Health and Life Sciences","citation:freeKeyword":[{"citation:freeKeywordValue":"genome sequence"},{"citation:freeKeywordValue":"flavonoids"},{"citation:freeKeywordValue":"anthocyanins"},{"citation:freeKeywordValue":"flower color"},{"citation:freeKeywordValue":"Aquilegia vulgaris"}],"publication":{"publicationRelationType":"Cites","publicationCitation":"de Oliveira, J. A. V. S., Friedhoff R., Wolff K., Pucker B. (2024). Genome sequence of the ornamental plant Aquilegia vulgaris reveals the flavonoid biosynthesis gene repertoire. bioRxiv 2024.12.16.628782; doi: 10.1101/2024.12.16.628782","publicationIDType":"doi","publicationIDNumber":"10.1101/2024.12.16.628782","publicationURL":"https://doi.org/10.1101/2024.12.16.628782"},"language":"English","grantNumber":{"citation:grantNumberAgency":"German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE","citation:grantNumberValue":"Forschungszentrum Jülich and W-de.NBI-001, W-de.NBI-004, W-de.NBI-008, W-de.NBI-010, W-de.NBI-013, W-de.NBI-014, W-de.NBI-016, W-de.NBI-022"},"citation:depositor":"Vieira Salgado de Oliveira, Julie Anne","dateOfDeposit":"2026-01-14","relatedDatasets":"https://doi.org/10.24355/dbbs.084-202410280909-0","@id":"https://doi.org/10.60507/FK2/GKLMOG","@type":["ore:Aggregation","schema:Dataset"],"schema:version":"1.0","schema:name":"Purple and White Aquilegia vulgaris genome sequence and annotation V2","schema:dateModified":"2026-01-20 16:40:11.292","schema:datePublished":"2026-01-20","schema:creativeWorkStatus":"RELEASED","schema:license":"http://creativecommons.org/licenses/by/4.0","dvcore:fileTermsOfAccess":{"dvcore:fileRequestAccess":true},"schema:includedInDataCatalog":"bonndata","schema:isPartOf":{"schema:name":"bonndata","@id":"https://bonndata.uni-bonn.de/dataverse/bonndata-root","schema:description":"<h3>bonndata is the institutional, cross-disciplinary research data repository for the publication of research data for all researchers at the University of Bonn.\n<br> bonndata is provided by the <a href=\"https://www.hrz.uni-bonn.de/de\">University IT and Data Center </a> and maintained by the <a href=\"https://www.forschungsdaten.uni-bonn.de/de\">Research Data Service Center</a>.\n<br><hr>\nReady to get started with bonndata? \n<br>\nHave a look at our <a href=\"https://confluence.team.uni-bonn.de/x/-1dqBg\">User Guide</a> to get to know the bonndata workflow, tips and tricks!\n<br><hr>\nQuestions? Need assistance? \n<br>\nGet in touch: <b> researchdata@uni-bonn.de</h3>\n<br><hr>"},"schema:inLanguage":"en","ore:aggregates":[{"schema:description":"purple structural annotation","schema:name":"Aquilegia_vulgaris_purple.anno.gff.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/UXOYZP","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15295/Aquilegia_vulgaris_purple.anno.gff.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":7272523,"dvcore:storageIdentifier":"file://19bc6f3ef32-10c7cc2893e1","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"f18485ff386be3efa11ca450a68c1930"}},{"schema:description":"purple functional annotation","schema:name":"Aquilegia_vulgaris_purple.anno.txt.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/H3DQTH","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15311/Aquilegia_vulgaris_purple.anno.txt.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":618123,"dvcore:storageIdentifier":"file://19bd07f74fc-4df94301ecdd","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"71dd44ac5beb50d3c944904890d57317"}},{"schema:description":"CDS","schema:name":"Aquilegia_vulgaris_purple.cds.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/AYMLGV","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15297/Aquilegia_vulgaris_purple.cds.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":9898794,"dvcore:storageIdentifier":"file://19bc6f87540-7429bc544f21","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"102d243d1e238cce2c96ea3cd73518be"}},{"schema:description":"Purple genome sequence ","schema:name":"Aquilegia_vulgaris_purple.genomic.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/1BKGM9","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15267/Aquilegia_vulgaris_purple.genomic.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":91246714,"dvcore:storageIdentifier":"file://19bbd9e56ab-04107b54afa6","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"0383ed1982a00cd787d709ce9619c4cd"}},{"schema:name":"Aquilegia_vulgaris_purple.pep.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/XPEPHF","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15269/Aquilegia_vulgaris_purple.pep.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":6529281,"dvcore:storageIdentifier":"file://19bbd9e5ad0-425a1fbe6e22","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"306e2e381d2eeef13e1e58aceed3a22a"}},{"schema:description":"white structural annotation","schema:name":"Aquilegia_vulgaris_white.anno.gff.gz","dvcore:restricted":false,"schema:version":2,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/QDGVSO","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15300/Aquilegia_vulgaris_white.anno.gff.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":7691707,"dvcore:storageIdentifier":"file://19bcbb99f1e-49548f12b2ff","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"00b507aa9bd8f4ca2e0a623ba2e92a4f"}},{"schema:description":"white functional annotation","schema:name":"Aquilegia_vulgaris_white.anno.txt.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/7AN2ZQ","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15310/Aquilegia_vulgaris_white.anno.txt.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":594872,"dvcore:storageIdentifier":"file://19bd07fdc6e-3d116819dc31","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"aba466132ad5e4f134a2be437c495ea5"}},{"schema:description":"CDS","schema:name":"Aquilegia_vulgaris_white.cds.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/Z1ZE4M","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15302/Aquilegia_vulgaris_white.cds.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":11153644,"dvcore:storageIdentifier":"file://19bcbb9a0b4-0f6084c8caf1","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"66c4eb00ceda12e58b8df32bedeea8a8"}},{"schema:description":"White genome sequence","schema:name":"Aquilegia_vulgaris_white.genomic.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/A1FPYK","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15268/Aquilegia_vulgaris_white.genomic.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":78494074,"dvcore:storageIdentifier":"file://19bbd9e6319-54097c2c1369","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"19b0b7f3b20b4cb41cf240b227d63dee"}},{"schema:name":"Aquilegia_vulgaris_white.pep.fasta.gz","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/6IUNJO","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15301/Aquilegia_vulgaris_white.pep.fasta.gz","@type":"ore:AggregatedResource","schema:fileFormat":"application/gzip","dvcore:filesize":7301771,"dvcore:storageIdentifier":"file://19bcbb9a222-ef35e98b8b44","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"c2ece3c40e6a33ed9c65f9f808b2d7bb"}},{"schema:name":"README.txt","dvcore:restricted":false,"schema:version":1,"dvcore:datasetVersionId":561,"@id":"doi:10.60507/FK2/GKLMOG/LZTG11","schema:sameAs":"https://bonndata.uni-bonn.de/catalog/downloads/15473/README.txt","@type":"ore:AggregatedResource","schema:fileFormat":"text/plain","dvcore:filesize":5878,"dvcore:storageIdentifier":"file://19bdb4b2664-f730125f9536","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"84a10b3f271d6ffa05eb32c1cbd51f98"}}],"schema:hasPart":["doi:10.60507/FK2/GKLMOG/UXOYZP","doi:10.60507/FK2/GKLMOG/H3DQTH","doi:10.60507/FK2/GKLMOG/AYMLGV","doi:10.60507/FK2/GKLMOG/1BKGM9","doi:10.60507/FK2/GKLMOG/XPEPHF","doi:10.60507/FK2/GKLMOG/QDGVSO","doi:10.60507/FK2/GKLMOG/7AN2ZQ","doi:10.60507/FK2/GKLMOG/Z1ZE4M","doi:10.60507/FK2/GKLMOG/A1FPYK","doi:10.60507/FK2/GKLMOG/6IUNJO","doi:10.60507/FK2/GKLMOG/LZTG11"]},"@context":{"author":"http://purl.org/dc/terms/creator","authorIdentifier":"http://purl.org/spar/datacite/AgentIdentifier","authorIdentifierScheme":"http://purl.org/spar/datacite/AgentIdentifierScheme","citation":"https://dataverse.org/schema/citation/","dateOfDeposit":"http://purl.org/dc/terms/dateSubmitted","dcterms":"http://purl.org/dc/terms/","dvcore":"https://dataverse.org/schema/core#","grantNumber":"https://schema.org/sponsor","language":"http://purl.org/dc/terms/language","ore":"http://www.openarchives.org/ore/terms/","personName":"https://schema.org/name","publication":"http://purl.org/dc/terms/isReferencedBy","publicationCitation":"http://purl.org/dc/terms/bibliographicCitation","publicationIDNumber":"http://purl.org/spar/datacite/ResourceIdentifier","publicationIDType":"http://purl.org/spar/datacite/ResourceIdentifierScheme","publicationRelationType":"http://datacite.org/schema/kernel-4/simpleTypes#relationType","publicationURL":"https://schema.org/distribution","relatedDatasets":"http://purl.org/dc/terms/relation","schema":"http://schema.org/","scheme":"http://www.w3.org/2004/02/skos/core#inScheme","subject":"http://purl.org/dc/terms/subject","title":"http://purl.org/dc/terms/title"}}