Genome sequence and annotation of Victoria cruziana

Name: Genome sequence and annotation of Victoria cruziana
Published: 2025-07-22
License: http://creativecommons.org/licenses/by/4.0

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Important usage condition: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

Persistent identifier: doi:10.60507/FK2/5DS0JZ
Published version: 1.0
Publication date: 2025-07-22
License: CC BY 4.0

Description

The genome of a <i>Victoria cruziana</i> plant was sequenced with nanopore long reads. The genome sequence was assembled with Verkko2, scaffolding was conducted with CPhasing and the gene models were predicted by BRAKER3 and GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences.

Creators

Nowak, Melina Sophie
Harder, Benjamin
Meckoni, Samuel Nestor
Friedhoff, Ronja
Wolff, Katharina
Pucker, Boas

Keywords

Victoria cruziana, anthocyanin biosynthesis, flavonoid biosynthesis, long read sequencing, direct RNA sequencing, Nymphaeaceae, color change

Files

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File	Type	Bytes	Checksum
Victoria_cruziana_VB03.tar.gz	application/gzip	1217041251	MD5 47796d87218347dfcf56f5f4ec32dece
README_Victoria_cruziana.txt	text/plain	5607	MD5 a0e0115aace0787d4824afa79d4f4a0d

Citation

Nowak, Melina Sophie; Harder, Benjamin; Meckoni, Samuel Nestor; Friedhoff, Ronja; Wolff, Katharina; Pucker, Boas, 2025-07-22, Genome sequence and annotation of Victoria cruziana, doi:10.60507/FK2/5DS0JZ, V1.0

Additional Dataverse fields

Id	454
Dataset Type	dataset
Internal Version Number	12
Latest Version Publishing State	RELEASED
Deaccession Link	Not supplied
Release Time	2025-07-22T13:15:03Z
Create Time	2025-07-21T21:48:44Z
Citation Date	2025-07-22
File Access Request	True

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Static metadata exports available for this published dataset version:

Complete Dataverse metadata

Citation Metadata

Title title

Genome sequence and annotation of Victoria cruziana

Author author

Author Name
Nowak, Melina Sophie
Author Affiliation
TU Braunschweig
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
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Type Class
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Value
https://orcid.org/0009-0000-9859-8992
Expandedvalue
Person Name
Nowak, Melina Sophie
@id
https://orcid.org/0009-0000-9859-8992
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Harder, Benjamin
Author Affiliation
TU Braunschweig
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
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False
Type Class
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Value
https://orcid.org/0009-0001-5001-7164
Expandedvalue
Person Name
Harder, Benjamin
@id
https://orcid.org/0009-0001-5001-7164
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Meckoni, Samuel Nestor
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0003-4877-8762
Expandedvalue
Person Name
Meckoni, Samuel Nestor
@id
https://orcid.org/0000-0003-4877-8762
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Friedhoff, Ronja
Author Affiliation
TU Braunschweig
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0009-0002-0270-4661
Expandedvalue
Person Name
Friedhoff, Ronja
@id
https://orcid.org/0009-0002-0270-4661
Scheme
ORCID
@type
https://schema.org/Person
Author Name
Wolff, Katharina
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
0000-0002-3616-0482
Author Name
Pucker, Boas
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
0000-0002-3321-7471

Dataset Contact datasetContact

Dataset Contact Name
Pucker, Boas
Dataset Contact Affiliation
University of Bonn
Dataset Contact Email
pucker@uni-bonn.de

Ds Description dsDescription

Ds Description Value
The genome of a <i>Victoria cruziana</i> plant was sequenced with nanopore long reads. The genome sequence was assembled with Verkko2, scaffolding was conducted with CPhasing and the gene models were predicted by BRAKER3 and GeMoMa. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences.

Subject subject

Other

Subject Refinement subjectRefinement

Subject Refinement Value
Plant Sciences [202]

Free Keyword freeKeyword

Free Keyword Value
Victoria cruziana
Free Keyword Value
anthocyanin biosynthesis
Free Keyword Value
flavonoid biosynthesis
Free Keyword Value
long read sequencing
Free Keyword Value
direct RNA sequencing
Free Keyword Value
Nymphaeaceae
Free Keyword Value
color change

Publication publication

Publication Relation Type
IsSupplementTo
Publication Citation
Nowak M. S.*, Harder B.*, Meckoni S. N.*, Friedhoff R., Wolff K., Pucker B. (2024). Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana. bioRxiv 2024.06.15.599162; doi: 10.1101/2024.06.15.599162.
Publication IDType
doi
Publication IDNumber
10.1101/2024.06.15.599162
Publication URL
https://doi.org/10.1101/2024.06.15.599162

Depositor depositor

Meckoni, Samuel

Date Of Deposit dateOfDeposit

2025-07-21

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