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M., Wolff K., Friedhoff R., Pucker B. (2025). Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation. bioRxiv. doi: 10.1101/2024.02.14.580303.","publicationIDType":"doi","publicationIDNumber":"10.1101/2024.02.14.580303","publicationURL":"https://doi.org/10.1101/2024.02.14.580303","publicationRelationType":"Cites"},"citation:dsDescription":{"citation:dsDescriptionValue":"Here we present a high-quality genome sequence and annotation of Digitalis purpurea (commonly known as foxglove), a plant valued both for its ornamental flowers and for producing the cardiac drug digoxin. The study aims to uncover the genetic basis of flower color variation in this species. Using ONT long-read sequencing data, we assembled the genome sequence of a magenta-flowering D. purpurea individual. We performed extensive gene prediction and functional annotation of protein-coding genes. Genes of the flavonoid biosynthesis were compared between magenta and white flowering individuals. Expression patterns were compared between different plant organs and between plants with different flower colors. 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Our focus is on the genetic basis of plant specialized metabolism and the evolution of biosynthetic capabilities. To elucidate biosynthetic networks, we combine data from our own sequencing with public datasets. Bioinformatics tools are developed to answer specific questions through the analysis of large datasets, often employing methods of artificial intelligence. We investigate the regulation of biosynthetic networks through transcriptomics. Phylogenetic analyses assist in selecting candidate genes for specific molecular functions. Identified genes and biosynthetic pathways serve as a basis for experiments using synthetic biology methods. 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