Genome sequence and annotation of Urtica dioica

Name: Genome sequence and annotation of Urtica dioica
Published: 2026-05-12
License: http://creativecommons.org/licenses/by/4.0

Open this dataset in the live repository

Important usage condition: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

Persistent identifier: doi:10.60507/FK2/1XHSZ3
Published version: 1.0
Publication date: 2026-05-12
License: CC BY 4.0

Description

The Urtica dioica genome was sequenced with ONT long-reads. The genome sequence was assembled with Hifiasm and annotated with GeMoMa.

Creators

Pucker, Boas
Wolff, Katharina
Vieira Salgado de Oliveira, Julie Anne

Keywords

flavonoids, anthocyanins, flavonols, genomics

Files

Before downloading: Use and redistribution are governed by CC BY 4.0. Review and comply with the license before using the data.

File	Type	Bytes	Checksum
Urtica_dioica.v1.pep.fasta.gz	application/gzip	9629778	MD5 5aba07aa47df3401b59888e7117f9365
Urtica_dioica.v1.genome.gff.gz	application/gzip	7171721	MD5 5ed6b1d022add33f9c6b2d64a49a9e0d
Urtica_dioica.v1.cds.fasta.gz	application/gzip	14514285	MD5 161f2ede3b5a48971668b9a00ef09ad4
Urtica_dioica.v1.anno.txt.gz	application/gzip	779071	MD5 2d775ece4b12d05ef58a3a90d0809cee
Urtica_dioica.v1.genome.fasta.gz	application/gzip	274544885	MD5 4e65e1ec955e3a6bf9d2a61675e05c85
Urtica_dioica.v1.tpms.txt.gz	application/gzip	3167244	MD5 a939940c00f013a61f2f6b5060184130
README.txt	text/plain	4752	MD5 53381bee92e4530e067dbdcc05d56ec8

Citation

Pucker, Boas; Wolff, Katharina; Vieira Salgado de Oliveira, Julie Anne, 2026-05-12, Genome sequence and annotation of Urtica dioica, doi:10.60507/FK2/1XHSZ3, V1.0

Additional Dataverse fields

Id	745
Dataset Type	dataset
Internal Version Number	13
Latest Version Publishing State	RELEASED
Release Time	2026-05-12T04:55:16Z
Create Time	2026-05-08T02:56:19Z
Citation Date	2026-05-12
File Access Request	True

Export metadata

Static metadata exports available for this published dataset version:

Complete Dataverse metadata

Citation Metadata

Title title

Genome sequence and annotation of Urtica dioica

Author author

Author Name
Pucker, Boas
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
0000-0002-3321-7471
Author Name
Wolff, Katharina
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
0000-0002-3616-0482
Author Name
Vieira Salgado de Oliveira, Julie Anne
Author Affiliation
University of Bonn
Author Identifier Scheme
ORCID
Author Identifier
Type Name
authorIdentifier
Multiple
False
Type Class
primitive
Value
https://orcid.org/0000-0001-9930-6373
Expandedvalue
Person Name
Vieira Salgado de Oliveira, Julie Anne
@id
https://orcid.org/0000-0001-9930-6373
Scheme
ORCID
@type
https://schema.org/Person

Dataset Contact datasetContact

Dataset Contact Name
Pucker, Boas
Dataset Contact Affiliation
University of Bonn
Dataset Contact Email
pucker@uni-bonn.de

Ds Description dsDescription

Ds Description Value
The Urtica dioica genome was sequenced with ONT long-reads. The genome sequence was assembled with Hifiasm and annotated with GeMoMa.

Subject subject

Medicine, Health and Life Sciences

Free Keyword freeKeyword

Free Keyword Value
flavonoids
Free Keyword Value
anthocyanins
Free Keyword Value
flavonols
Free Keyword Value
genomics

Depositor depositor

Pucker, Boas

Date Of Deposit dateOfDeposit

2026-05-08

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