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Part 1: Document Description
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Citation |
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Title: |
Genome annotation of Manihot esculenta (cassava) |
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Identification Number: |
doi:10.60507/FK2/IHEIMY |
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Distributor: |
bonndata |
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Date of Distribution: |
2026-09-18 |
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Version: |
1 |
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Bibliographic Citation: |
Shittu, Moyosore Priscilla; Pucker, Boas, 2026, "Genome annotation of Manihot esculenta (cassava)", https://doi.org/10.60507/FK2/IHEIMY, bonndata, V1 |
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Citation |
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Title: |
Genome annotation of Manihot esculenta (cassava) |
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Identification Number: |
doi:10.60507/FK2/IHEIMY |
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Authoring Entity: |
Shittu, Moyosore Priscilla (University of Bonn) |
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Pucker, Boas (University of Bonn) |
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Distributor: |
bonndata |
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Access Authority: |
Pucker, Boas |
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Depositor: |
Shittu, Moyosore Priscilla |
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Date of Deposit: |
2026-09-18 |
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Holdings Information: |
https://doi.org/10.60507/FK2/IHEIMY |
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Study Scope |
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Keywords: |
Agricultural Sciences, Medicine, Health and Life Sciences, Other |
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Abstract: |
The genome annotation of 11 Manihot esculenta (cassava) cultivars retrieved from the NCBI genome database. We predicted gene models using the homology-based annotation tool GeMoMa, using Jatropha curcas and Hevea brasiliensis, both close relatives of cassava within the Euphorbiaceae, as reference gene models. This annotation resource was generated to support a comparative genomics investigation into the genetic basis of intraspecific pigmentation differences in cassava, with a particular focus on the MYB-bHLH-WD40 (MBW) regulatory complex controlling anthocyanin biosynthesis (R2R3-MYB and R3-MYB activators/repressors and their bHLH partners). This data publication contains the coding sequences, predicted polypeptide sequences, and structural annotations (GFF3) for each of the 11 cultivars. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0</a> |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Moyosore Priscilla Shittu & Boas Pucker (2026). Comparative Genomics Reveals Genetic Factors Associated with Intraspecific Pigmentation Differences in Cassava bioRxiv 2026.09.18.752618; doi:10.1101/2026.09.18.752618 |
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Bibliographic Citation: |
Moyosore Priscilla Shittu & Boas Pucker (2026). Comparative Genomics Reveals Genetic Factors Associated with Intraspecific Pigmentation Differences in Cassava bioRxiv 2026.09.18.752618; doi:10.1101/2026.09.18.752618 |
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GCA_000737105.1_MW_v2d.zip |
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application/zip |
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GCA_000737115.1_MK_v2b.zip |
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application/zip |
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GCA_003957885.1_ASM395788v1.zip |
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application/zip |
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GCA_003957995.1_ASM395799v1.zip |
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application/zip |
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GCA_013618965.1_ASM1361896v1.zip |
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application/zip |
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GCA_020916425.1_hifiasm_hap2.zip |
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application/zip |
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GCA_020916445.1_hifiasm_hap1.zip |
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application/zip |
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GCA_033783075.1_ASM3378307v1.zip |
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application/zip |
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GCA_033783085.1_ASM3378308v1.zip |
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application/zip |
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GCA_963409055.1_TME3.zip |
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application/zip |
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GCA_963409065.1_60444.zip |
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application/zip |
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README.txt |
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text/plain |