|
View: |
Part 1: Document Description
|
|
Citation |
|
|---|---|
|
Title: |
Digitalis purpurea genome sequence and annotation V2 |
|
Identification Number: |
doi:10.60507/FK2/4KUKXI |
|
Distributor: |
bonndata |
|
Date of Distribution: |
2025-10-17 |
|
Version: |
1 |
|
Bibliographic Citation: |
Horz, Jakob; Wolff, Katharina; Friedhoff, Ronja; Pucker, Boas, 2025, "Digitalis purpurea genome sequence and annotation V2", https://doi.org/10.60507/FK2/4KUKXI, bonndata, V1 |
|
Citation |
|
|
Title: |
Digitalis purpurea genome sequence and annotation V2 |
|
Identification Number: |
doi:10.60507/FK2/4KUKXI |
|
Authoring Entity: |
Horz, Jakob (University of Bonn) |
|
Wolff, Katharina (University of Bonn) |
|
|
Friedhoff, Ronja (TU Braunschweig) |
|
|
Pucker, Boas (University of Bonn) |
|
|
Distributor: |
bonndata |
|
Access Authority: |
Pucker, Boas |
|
Depositor: |
Pucker, Boas |
|
Date of Deposit: |
2025-10-12 |
|
Holdings Information: |
https://doi.org/10.60507/FK2/4KUKXI |
|
Study Scope |
|
|
Keywords: |
Medicine, Health and Life Sciences, Medicine, Health and Life Sciences |
|
Abstract: |
Here we present a high-quality genome sequence and annotation of Digitalis purpurea (commonly known as foxglove), a plant valued both for its ornamental flowers and for producing the cardiac drug digoxin. The study aims to uncover the genetic basis of flower color variation in this species. Using ONT long-read sequencing data, we assembled the genome sequence of a magenta-flowering D. purpurea individual. We performed extensive gene prediction and functional annotation of protein-coding genes. Genes of the flavonoid biosynthesis were compared between magenta and white flowering individuals. Expression patterns were compared between different plant organs and between plants with different flower colors. Through these analyses, we identified a large insertion in the anthocyanidin synthase (ANS) that explains the differences between magenta and white flowers. This data publication contains the genome sequence with the corresponding annotation V2. |
|
Methodology and Processing |
|
|
Sources Statement |
|
|
Data Access |
|
|
Notes: |
<a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0</a> |
|
Other Study Description Materials |
|
|
Related Studies |
|
|
https://doi.org/10.24355/dbbs.084-202311130950-0 |
|
|
Related Publications |
|
|
Citation |
|
|
Title: |
Horz J. M., Wolff K., Friedhoff R., Pucker B. (2025). Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation. bioRxiv. doi: 10.1101/2024.02.14.580303. |
|
Identification Number: |
10.1101/2024.02.14.580303 |
|
Bibliographic Citation: |
Horz J. M., Wolff K., Friedhoff R., Pucker B. (2025). Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation. bioRxiv. doi: 10.1101/2024.02.14.580303. |
|
Label: |
DR1_v1.annoV2.anno.gff.gz |
|
Text: |
structural annotation |
|
Notes: |
application/gzip |
|
Label: |
DR1_v1.annoV2.anno.txt.gz |
|
Text: |
functional annotation |
|
Notes: |
application/gzip |
|
Label: |
DR1_v1.annoV2.cds.fasta.gz |
|
Text: |
CDS |
|
Notes: |
application/gzip |
|
Label: |
DR1_v1.annoV2.genome.fasta.gz |
|
Text: |
genome sequence |
|
Notes: |
application/gzip |
|
Label: |
DR1_v1.annoV2.pep.fasta.gz |
|
Notes: |
application/gzip |
|
Label: |
DR1_v1.annoV2.tpms.txt.gz |
|
Notes: |
application/gzip |
|
Label: |
README.txt |
|
Notes: |
text/plain |