<codeBook xmlns="ddi:codebook:2_5" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="ddi:codebook:2_5 https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd" version="2.5" xml:lang="en"><docDscr><citation><titlStmt><titl xml:lang="en">Pigmented and unpigmented Muscari commutatum genome sequence and annotation v1</titl><IDNo agency="DOI">doi:10.60507/FK2/G2TRGZ</IDNo></titlStmt><distStmt><distrbtr source="archive">bonndata</distrbtr><distDate>2026-09-18</distDate></distStmt><verStmt source="archive"><version date="2026-09-18" type="RELEASED">1</version></verStmt><biblCit>Vieira Salgado de Oliveira, Julie Anne; Böhnert, Tim; Pucker, Boas, 2026, "Pigmented and unpigmented Muscari commutatum genome sequence and annotation v1", https://doi.org/10.60507/FK2/G2TRGZ, bonndata, V1</biblCit></citation></docDscr><stdyDscr><citation><titlStmt><titl xml:lang="en">Pigmented and unpigmented Muscari commutatum genome sequence and annotation v1</titl><IDNo agency="DOI">doi:10.60507/FK2/G2TRGZ</IDNo></titlStmt><rspStmt><AuthEnty affiliation="University of Bonn">Vieira Salgado de Oliveira, Julie Anne</AuthEnty><AuthEnty affiliation="University of Bonn">Böhnert, Tim</AuthEnty><AuthEnty affiliation="University of Bonn">Pucker, Boas</AuthEnty></rspStmt><prodStmt><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">Forschungszentrum Jülich and W-de.NBI-001</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-004</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-008</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-010</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-013</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-014</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-016</grantNo><grantNo agency="German Network for Bioinformatics Infrastructure (de.NBI) and ELIXIR-DE">W-de.NBI-022</grantNo></prodStmt><distStmt><distrbtr source="archive">bonndata</distrbtr><contact affiliation="University of Bonn" email="pucker@uni-bonn.de">Pucker, Boas</contact><depositr>Vieira Salgado de Oliveira, Julie</depositr><depDate>2026-09-03</depDate></distStmt><holdings URI="https://doi.org/10.60507/FK2/G2TRGZ"/></citation><stdyInfo><subject><keyword xml:lang="en">Agricultural Sciences</keyword></subject><abstract xml:lang="en">Here we present high-quality genome sequences and corresponding annotations of Muscari commutatum, a perennial herb in the Asparagaceae family. The study uncovers the flavonoid biosynthesis gene repertoire underlying anthocyanin pigmentation in this species. Using ONT long-read sequencing data, highly continuous genome assemblies were generated for both an anthocyanin-pigmented and an unpigmented M. commutatum plant. This data publication contains the genome sequences with corresponding annotations.</abstract><sumDscr/></stdyInfo><method><dataColl><sources/></dataColl><anlyInfo/></method><dataAccs><setAvail/><useStmt/><notes type="DVN:TOU" level="dv">&lt;a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0&lt;/a></notes></dataAccs><othrStdyMat/></stdyDscr><otherMat ID="f58730" URI="https://bonndata.uni-bonn.de/api/access/datafile/58730" level="datafile"><labl>Muscari_commutatum_pigmented.anno.gff.gz</labl><txt>Structural annotation pigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58723" URI="https://bonndata.uni-bonn.de/api/access/datafile/58723" level="datafile"><labl>Muscari_commutatum_pigmented.anno.txt.gz</labl><txt>Functional annotation pigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58728" URI="https://bonndata.uni-bonn.de/api/access/datafile/58728" level="datafile"><labl>Muscari_commutatum_pigmented.cds.fasta.gz</labl><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58724" URI="https://bonndata.uni-bonn.de/api/access/datafile/58724" level="datafile"><labl>Muscari_commutatum_pigmented.genomic.fasta.gz</labl><txt>Genome pigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58725" URI="https://bonndata.uni-bonn.de/api/access/datafile/58725" level="datafile"><labl>Muscari_commutatum_pigmented.pep.fasta.gz</labl><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58727" URI="https://bonndata.uni-bonn.de/api/access/datafile/58727" level="datafile"><labl>Muscari_commutatum_unpigmented.anno.gff.gz</labl><txt>Structural annotation unpigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58722" URI="https://bonndata.uni-bonn.de/api/access/datafile/58722" level="datafile"><labl>Muscari_commutatum_unpigmented.anno.txt.gz</labl><txt>Functional annotation unpigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58729" URI="https://bonndata.uni-bonn.de/api/access/datafile/58729" level="datafile"><labl>Muscari_commutatum_unpigmented.cds.fasta.gz</labl><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58726" URI="https://bonndata.uni-bonn.de/api/access/datafile/58726" level="datafile"><labl>Muscari_commutatum_unpigmented.genomic.fasta.gz</labl><txt>Genome unpigmented</txt><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58731" URI="https://bonndata.uni-bonn.de/api/access/datafile/58731" level="datafile"><labl>Muscari_commutatum_unpigmented.pep.fasta.gz</labl><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">application/gzip</notes></otherMat><otherMat ID="f58653" URI="https://bonndata.uni-bonn.de/api/access/datafile/58653" level="datafile"><labl>README.txt</labl><notes level="file" type="DATAVERSE:CONTENTTYPE" subject="Content/MIME Type">text/plain</notes></otherMat></codeBook>