PanXpresso - comprehensive collection of gene expression data across domains of lifehttps://doi.org/10.60507/FK2/OBIGQHNatarajan, ShakunthalaSterling, ClaudiaChoudhary, NancyKhatun, NajninBrieske, Mia-SophieBusch, Hannah ElisaPucker, Boasbonndata2026-08-292026-08-29T05:04:43ZThis is a comprehensive collection of gene expression count tables in transcripts per million (TPMs) encompassing species from five domains of life - plants, fungi, animals, bacteria and archaea. This data publication is referenced and discussed in detail in the manuscript - “XpBrew and PanXpresso - automatic RNA-seq processing workflow and comprehensive collection of gene expression data”. This dataset contains the annotation files, and expression files bundled as a tarball per species. It also includes a detailed supplementary file that provides information on the data sources and quality of the datasets used in the study, along with a detailed taxonomic classification of the different species covered in the current collection.Medicine, Health and Life SciencesEnglishXpBrew and PanXpresso - automatic RNA-seq processing workflow and comprehensive collection of gene expression data (in preparation), doi, 10.64898/2026.08.27.747620, https://doi.org/10.64898/2026.08.27.7476202026-08-29Natarajan, Shakunthala2026-08-272025-12-012026-08-24Strucural annotation files, Gene expression dataPlease see the "Reference" information in SuppFile01_PanXpresso_DataSources-Reference-Taxonomy.tsv for details.CC BY 4.0