10.60507/FK2/OBIGQH
Natarajan, Shakunthala
Shakunthala
Natarajan
https://orcid.org/0000-0002-4713-2380
University of Bonn
Sterling, Claudia
Claudia
Sterling
https://orcid.org/0009-0002-3078-4056
University of Bonn
Choudhary, Nancy
Nancy
Choudhary
https://orcid.org/0000-0002-2562-7905
University of Bonn
Khatun, Najnin
Najnin
Khatun
https://orcid.org/0009-0000-3003-3338
University of Bonn
Brieske, Mia-Sophie
Mia-Sophie
Brieske
https://orcid.org/0009-0006-6581-9502
University of Bonn
Busch, Hannah Elisa
Hannah Elisa
Busch
https://orcid.org/0009-0000-5300-680X
University of Bonn
Pucker, Boas
Boas
Pucker
https://orcid.org/0000-0002-3321-7471
University of Bonn
PanXpresso - comprehensive collection of gene expression data across domains of life
bonndata
2026
Medicine, Health and Life Sciences
Natarajan, Shakunthala
Shakunthala
Natarajan
University of Bonn
Pucker, Boas
Boas
Pucker
University of Bonn
2026-08-27
2026-08-29
2025-12-01/2026-08-24
Strucural annotation files, Gene expression data
10.64898/2026.08.27.747620
10.60507/FK2/OBIGQH/V4MEAV
10.60507/FK2/OBIGQH/HOCX0P
10.60507/FK2/OBIGQH/PLVIJR
10.60507/FK2/OBIGQH/SPF6DI
10.60507/FK2/OBIGQH/GPBIXR
10.60507/FK2/OBIGQH/EXSJRQ
10.60507/FK2/OBIGQH/WJIGRF
10.60507/FK2/OBIGQH/PZCZLB
10.60507/FK2/OBIGQH/2P4L2X
10.60507/FK2/OBIGQH/28BYFW
10.60507/FK2/OBIGQH/9YWABT
10.60507/FK2/OBIGQH/DVSXML
10.60507/FK2/OBIGQH/S3ZELY
10.60507/FK2/OBIGQH/HVVALK
10.60507/FK2/OBIGQH/IGQ9UN
10.60507/FK2/OBIGQH/P3ZSIR
10.60507/FK2/OBIGQH/AKECJ2
10.60507/FK2/OBIGQH/FKNQRB
10.60507/FK2/OBIGQH/5D80PX
10.60507/FK2/OBIGQH/DQCZQX
10.60507/FK2/OBIGQH/ECWJWD
10.60507/FK2/OBIGQH/9PWIRE
10.60507/FK2/OBIGQH/6CYBKG
10.60507/FK2/OBIGQH/SE4U9I
10.60507/FK2/OBIGQH/INMIJN
10.60507/FK2/OBIGQH/WOAFSG
10.60507/FK2/OBIGQH/WWMUCV
10.60507/FK2/OBIGQH/IZOJIS
10.60507/FK2/OBIGQH/0TXBTE
10.60507/FK2/OBIGQH/29X8NY
10.60507/FK2/OBIGQH/FZE4FX
10.60507/FK2/OBIGQH/W1OBEY
10.60507/FK2/OBIGQH/QQIQPX
10.60507/FK2/OBIGQH/RRLFXG
10.60507/FK2/OBIGQH/NEYWA9
10.60507/FK2/OBIGQH/AGCXZG
10.60507/FK2/OBIGQH/BNEDUD
10.60507/FK2/OBIGQH/EDTXVJ
10.60507/FK2/OBIGQH/NNTZRT
10.60507/FK2/OBIGQH/MT30XE
10.60507/FK2/OBIGQH/OCYMH3
10.60507/FK2/OBIGQH/UG0UD1
10.60507/FK2/OBIGQH/JP1PU6
10.60507/FK2/OBIGQH/B7JFK4
10.60507/FK2/OBIGQH/NW1TOJ
10.60507/FK2/OBIGQH/ZNIIBE
10.60507/FK2/OBIGQH/PRYZSO
10.60507/FK2/OBIGQH/PGEILM
10.60507/FK2/OBIGQH/3IMJ1S
10.60507/FK2/OBIGQH/ADFCQI
10.60507/FK2/OBIGQH/CYFPOD
10.60507/FK2/OBIGQH/DIYSPS
10.60507/FK2/OBIGQH/IE8H8F
10.60507/FK2/OBIGQH/0FOODA
10.60507/FK2/OBIGQH/VI3O5T
10.60507/FK2/OBIGQH/KNPKNF
10.60507/FK2/OBIGQH/EAAWS9
10.60507/FK2/OBIGQH/YUBH1Q
10.60507/FK2/OBIGQH/BAK6WI
10.60507/FK2/OBIGQH/DRYNQR
10.60507/FK2/OBIGQH/T4TUCE
10.60507/FK2/OBIGQH/AH9BTV
10.60507/FK2/OBIGQH/AQ3HMT
10.60507/FK2/OBIGQH/HJ7CA2
10.60507/FK2/OBIGQH/LYBDX7
10.60507/FK2/OBIGQH/O1WHZF
10.60507/FK2/OBIGQH/8TDJJD
10.60507/FK2/OBIGQH/RKRKTS
10.60507/FK2/OBIGQH/XQU3JE
10.60507/FK2/OBIGQH/UHN793
10.60507/FK2/OBIGQH/ZFXHA9
10.60507/FK2/OBIGQH/E1HUY1
10.60507/FK2/OBIGQH/9OVWA9
10.60507/FK2/OBIGQH/Y39QXS
10.60507/FK2/OBIGQH/ZVXQ50
10.60507/FK2/OBIGQH/IUWKJE
10.60507/FK2/OBIGQH/YQW5YD
10.60507/FK2/OBIGQH/W0DRVB
10.60507/FK2/OBIGQH/MYL0CC
10.60507/FK2/OBIGQH/G6JPHJ
10.60507/FK2/OBIGQH/Y3FMDV
10.60507/FK2/OBIGQH/AGF5ZA
10.60507/FK2/OBIGQH/M49UZ3
10.60507/FK2/OBIGQH/NFHAH1
10.60507/FK2/OBIGQH/PLU7N6
10.60507/FK2/OBIGQH/ZPEUQU
10.60507/FK2/OBIGQH/KXUE50
10.60507/FK2/OBIGQH/HQZXMA
10.60507/FK2/OBIGQH/CI2VYC
10.60507/FK2/OBIGQH/VNBT9R
10.60507/FK2/OBIGQH/HRTHIM
10.60507/FK2/OBIGQH/VSFJCU
10.60507/FK2/OBIGQH/S3XPPA
10.60507/FK2/OBIGQH/1BUYE6
10.60507/FK2/OBIGQH/2BECKZ
10.60507/FK2/OBIGQH/PKXS5S
10.60507/FK2/OBIGQH/8EDXOY
10.60507/FK2/OBIGQH/RQ7KOA
10.60507/FK2/OBIGQH/ZSVA0V
10.60507/FK2/OBIGQH/DTMDPV
10.60507/FK2/OBIGQH/V7OUXW
10.60507/FK2/OBIGQH/4N9X2Y
10.60507/FK2/OBIGQH/ZYGPK5
10.60507/FK2/OBIGQH/DRNJT5
10.60507/FK2/OBIGQH/K6NBNZ
10.60507/FK2/OBIGQH/O4JZEB
10.60507/FK2/OBIGQH/ZJLKA1
10.60507/FK2/OBIGQH/BL0NJ0
10.60507/FK2/OBIGQH/BVBK87
10.60507/FK2/OBIGQH/HMQY4H
10.60507/FK2/OBIGQH/3TY3TL
10.60507/FK2/OBIGQH/SXZCJV
10.60507/FK2/OBIGQH/NHQNNM
10.60507/FK2/OBIGQH/HESSWU
10.60507/FK2/OBIGQH/FKOY7K
10.60507/FK2/OBIGQH/2ERRSA
10.60507/FK2/OBIGQH/DYODSD
10.60507/FK2/OBIGQH/SWSKDR
10.60507/FK2/OBIGQH/XWFZFH
10.60507/FK2/OBIGQH/EZZPZG
10.60507/FK2/OBIGQH/CJN3Z6
10.60507/FK2/OBIGQH/I0GMEL
10.60507/FK2/OBIGQH/7ETYRH
10.60507/FK2/OBIGQH/5ZE6HP
10.60507/FK2/OBIGQH/JJ4MLL
10.60507/FK2/OBIGQH/M2RUWI
10.60507/FK2/OBIGQH/ZBBC8H
10.60507/FK2/OBIGQH/LRZJYC
10.60507/FK2/OBIGQH/6ZE6TD
10.60507/FK2/OBIGQH/92UHCE
10.60507/FK2/OBIGQH/6J1J22
10.60507/FK2/OBIGQH/V7OV3D
10.60507/FK2/OBIGQH/4WLPGT
10.60507/FK2/OBIGQH/3MNXGI
10.60507/FK2/OBIGQH/MU2FH0
10.60507/FK2/OBIGQH/LAF7OS
10.60507/FK2/OBIGQH/BW1PMC
10.60507/FK2/OBIGQH/OJSYTX
10.60507/FK2/OBIGQH/ZEM8T4
10.60507/FK2/OBIGQH/E15MKY
10.60507/FK2/OBIGQH/4P3SOV
10.60507/FK2/OBIGQH/79YIWB
10.60507/FK2/OBIGQH/BLLWYH
10.60507/FK2/OBIGQH/WHXNRU
10.60507/FK2/OBIGQH/57ZFPT
10.60507/FK2/OBIGQH/X3ERGZ
10.60507/FK2/OBIGQH/USHBN7
10.60507/FK2/OBIGQH/Y29ERF
10.60507/FK2/OBIGQH/3UKZHW
10.60507/FK2/OBIGQH/MVTFIW
10.60507/FK2/OBIGQH/NCHPF5
10.60507/FK2/OBIGQH/S5FS9N
10.60507/FK2/OBIGQH/XWVSKK
10.60507/FK2/OBIGQH/QAYFR9
10.60507/FK2/OBIGQH/RIAPYI
10.60507/FK2/OBIGQH/VL4KTN
10.60507/FK2/OBIGQH/PLAVYJ
10.60507/FK2/OBIGQH/SXKXU5
10.60507/FK2/OBIGQH/LSUWCP
10.60507/FK2/OBIGQH/IZMO9L
10.60507/FK2/OBIGQH/II3SNJ
10.60507/FK2/OBIGQH/XYX2CD
10.60507/FK2/OBIGQH/ISEO4B
10.60507/FK2/OBIGQH/UAEEGX
10.60507/FK2/OBIGQH/AYYBSG
10.60507/FK2/OBIGQH/SLKAL8
10.60507/FK2/OBIGQH/TDKDKF
10.60507/FK2/OBIGQH/HHF9PB
10.60507/FK2/OBIGQH/OX2QGY
10.60507/FK2/OBIGQH/5WW9AI
10.60507/FK2/OBIGQH/UA9PIJ
10.60507/FK2/OBIGQH/QKRRCC
10.60507/FK2/OBIGQH/KLWNEX
10.60507/FK2/OBIGQH/MLU17B
10.60507/FK2/OBIGQH/IKL5SQ
10.60507/FK2/OBIGQH/KAOXZV
10.60507/FK2/OBIGQH/8MBBVC
10.60507/FK2/OBIGQH/TNZEO0
10.60507/FK2/OBIGQH/XAZ2FB
10.60507/FK2/OBIGQH/ZCQGKJ
10.60507/FK2/OBIGQH/ORH8HX
10.60507/FK2/OBIGQH/OYNYZ3
10.60507/FK2/OBIGQH/MILXR1
10.60507/FK2/OBIGQH/J0LD4R
10.60507/FK2/OBIGQH/SWA39I
10.60507/FK2/OBIGQH/VING51
10.60507/FK2/OBIGQH/7DRCOI
10.60507/FK2/OBIGQH/PFJEEN
10.60507/FK2/OBIGQH/FLZ4DN
10.60507/FK2/OBIGQH/6GZWN3
10.60507/FK2/OBIGQH/JK3ZUQ
10.60507/FK2/OBIGQH/3RM5YM
10.60507/FK2/OBIGQH/9DB5ZG
10.60507/FK2/OBIGQH/EKLPVF
10.60507/FK2/OBIGQH/VZLDRW
10.60507/FK2/OBIGQH/7CXEXA
10.60507/FK2/OBIGQH/E3YXFJ
10.60507/FK2/OBIGQH/LIROVM
10.60507/FK2/OBIGQH/8HZ35K
10.60507/FK2/OBIGQH/I69RWI
10.60507/FK2/OBIGQH/LAGMEZ
10.60507/FK2/OBIGQH/6MZHXQ
10.60507/FK2/OBIGQH/ADW49Y
10.60507/FK2/OBIGQH/BSHKLT
10.60507/FK2/OBIGQH/CHPSIW
10.60507/FK2/OBIGQH/6GXHDN
10.60507/FK2/OBIGQH/QAJ9SY
10.60507/FK2/OBIGQH/LXWTRT
10.60507/FK2/OBIGQH/RV7XD9
10.60507/FK2/OBIGQH/UMYBQY
10.60507/FK2/OBIGQH/3JFFZ9
10.60507/FK2/OBIGQH/OHABMT
10.60507/FK2/OBIGQH/AOPE98
10.60507/FK2/OBIGQH/SRBHVS
10.60507/FK2/OBIGQH/VGI2ZL
10.60507/FK2/OBIGQH/FEBRGZ
10.60507/FK2/OBIGQH/GBSLTU
10.60507/FK2/OBIGQH/LSLEK2
10.60507/FK2/OBIGQH/TNZSQZ
10.60507/FK2/OBIGQH/1AQHOK
10.60507/FK2/OBIGQH/EMMNHP
10.60507/FK2/OBIGQH/RDYK6E
10.60507/FK2/OBIGQH/D7PGPW
10.60507/FK2/OBIGQH/AYQIT1
10.60507/FK2/OBIGQH/LQTEXT
10.60507/FK2/OBIGQH/EEF4KF
10.60507/FK2/OBIGQH/EOEDAO
10.60507/FK2/OBIGQH/2PLZAT
10.60507/FK2/OBIGQH/SJEMST
10.60507/FK2/OBIGQH/3Z2118
10.60507/FK2/OBIGQH/F690RX
10.60507/FK2/OBIGQH/PVRLNR
10.60507/FK2/OBIGQH/JKIDUW
10.60507/FK2/OBIGQH/SC1YQ2
10.60507/FK2/OBIGQH/0HI4J8
10.60507/FK2/OBIGQH/IJ9TB8
10.60507/FK2/OBIGQH/USPX0A
10.60507/FK2/OBIGQH/XECZOE
10.60507/FK2/OBIGQH/VKYEOF
10.60507/FK2/OBIGQH/DMZVOA
10.60507/FK2/OBIGQH/RDKSEH
10.60507/FK2/OBIGQH/ANQGXT
10.60507/FK2/OBIGQH/BOHANT
10.60507/FK2/OBIGQH/3VCYAS
10.60507/FK2/OBIGQH/P0GCOO
10.60507/FK2/OBIGQH/O4P1GN
10.60507/FK2/OBIGQH/4FFUVO
10.60507/FK2/OBIGQH/GCXPWN
10.60507/FK2/OBIGQH/BRJUGS
10.60507/FK2/OBIGQH/FFHOFB
10.60507/FK2/OBIGQH/Z2B2KR
10.60507/FK2/OBIGQH/YNJUOL
10.60507/FK2/OBIGQH/LHRQKQ
10.60507/FK2/OBIGQH/XMZ8CK
10.60507/FK2/OBIGQH/F6DU5G
10.60507/FK2/OBIGQH/Y896JZ
10.60507/FK2/OBIGQH/UHYJJU
10.60507/FK2/OBIGQH/RUOE2I
10.60507/FK2/OBIGQH/9OIO8X
10.60507/FK2/OBIGQH/UNDTGQ
10.60507/FK2/OBIGQH/MW34XD
10.60507/FK2/OBIGQH/4AWPFX
10.60507/FK2/OBIGQH/KAQKRU
10.60507/FK2/OBIGQH/BLKLG6
10.60507/FK2/OBIGQH/9YNWDK
10.60507/FK2/OBIGQH/IUOVFW
10.60507/FK2/OBIGQH/HNRBCF
10.60507/FK2/OBIGQH/S7CV64
10.60507/FK2/OBIGQH/AXIGM6
10.60507/FK2/OBIGQH/UIPI5A
10.60507/FK2/OBIGQH/H3XVKV
10.60507/FK2/OBIGQH/AFCZUW
10.60507/FK2/OBIGQH/9QUBSR
10.60507/FK2/OBIGQH/WIQGEB
10.60507/FK2/OBIGQH/WDHMXA
10.60507/FK2/OBIGQH/NKWJ1O
10.60507/FK2/OBIGQH/XJUJPH
10.60507/FK2/OBIGQH/RHVUJS
10.60507/FK2/OBIGQH/6G6A4O
10.60507/FK2/OBIGQH/9SOJK9
10.60507/FK2/OBIGQH/YHTCPK
10.60507/FK2/OBIGQH/LQUY62
10.60507/FK2/OBIGQH/8Z1OK8
10.60507/FK2/OBIGQH/UHDILB
10.60507/FK2/OBIGQH/70RPR8
10.60507/FK2/OBIGQH/5YEHXS
10.60507/FK2/OBIGQH/Y9OSK5
10.60507/FK2/OBIGQH/DATVYN
10.60507/FK2/OBIGQH/PEYFBI
10.60507/FK2/OBIGQH/8ALRVQ
10.60507/FK2/OBIGQH/HXPKXD
10.60507/FK2/OBIGQH/BPWKQU
10.60507/FK2/OBIGQH/VV6QZT
10.60507/FK2/OBIGQH/RCWH66
10.60507/FK2/OBIGQH/P6ML4P
10.60507/FK2/OBIGQH/XAJC0I
10.60507/FK2/OBIGQH/6ZSTYU
10.60507/FK2/OBIGQH/TBNSKR
10.60507/FK2/OBIGQH/C9WKUA
10.60507/FK2/OBIGQH/OSUL4J
10.60507/FK2/OBIGQH/XRT0RP
10.60507/FK2/OBIGQH/DBAWYA
10.60507/FK2/OBIGQH/AOLRRQ
10.60507/FK2/OBIGQH/ZWXBCP
10.60507/FK2/OBIGQH/7WQ1CM
10.60507/FK2/OBIGQH/TJTTKM
10.60507/FK2/OBIGQH/3LUV4S
10.60507/FK2/OBIGQH/ITEAZP
10.60507/FK2/OBIGQH/LJNZXL
10.60507/FK2/OBIGQH/QRQ4PS
10.60507/FK2/OBIGQH/2AM023
10.60507/FK2/OBIGQH/LVSLRV
10.60507/FK2/OBIGQH/EBRPUC
10.60507/FK2/OBIGQH/EFHLVY
10.60507/FK2/OBIGQH/9EMRIA
10.60507/FK2/OBIGQH/D7CHRU
10.60507/FK2/OBIGQH/C4VKHA
10.60507/FK2/OBIGQH/XVGOLB
10.60507/FK2/OBIGQH/2NBFTY
10.60507/FK2/OBIGQH/ZRKASB
10.60507/FK2/OBIGQH/UMZ6NB
10.60507/FK2/OBIGQH/XETWIW
10.60507/FK2/OBIGQH/EFEDVP
10.60507/FK2/OBIGQH/RGWZ5P
10.60507/FK2/OBIGQH/8HQOOS
10.60507/FK2/OBIGQH/VCU1AV
10.60507/FK2/OBIGQH/NF6DSK
10.60507/FK2/OBIGQH/QWCWTO
10.60507/FK2/OBIGQH/O3KSA8
10.60507/FK2/OBIGQH/TLEPGS
10.60507/FK2/OBIGQH/RAZJSP
10.60507/FK2/OBIGQH/ZPIDRM
10.60507/FK2/OBIGQH/XWP1FD
10.60507/FK2/OBIGQH/UVFMP3
10.60507/FK2/OBIGQH/UYCSYP
10.60507/FK2/OBIGQH/ZQKWOE
10.60507/FK2/OBIGQH/HJT2D7
10.60507/FK2/OBIGQH/PLIBWC
10.60507/FK2/OBIGQH/CTVSHX
10.60507/FK2/OBIGQH/GFAPPI
10.60507/FK2/OBIGQH/LEDMRF
10.60507/FK2/OBIGQH/XOUVA3
10.60507/FK2/OBIGQH/X8JNOT
10.60507/FK2/OBIGQH/IKMNUN
10.60507/FK2/OBIGQH/QS4LUJ
10.60507/FK2/OBIGQH/ECCXJW
10.60507/FK2/OBIGQH/R3RMFS
10.60507/FK2/OBIGQH/MLCECZ
10.60507/FK2/OBIGQH/6JWLRQ
10.60507/FK2/OBIGQH/7J3WB1
10.60507/FK2/OBIGQH/HSHTNS
10.60507/FK2/OBIGQH/CJQEVU
10.60507/FK2/OBIGQH/ND2KF7
10.60507/FK2/OBIGQH/LUNS2S
10.60507/FK2/OBIGQH/ENVTQN
10.60507/FK2/OBIGQH/QYSNXO
10.60507/FK2/OBIGQH/UG0P1R
10.60507/FK2/OBIGQH/MIYNWO
10.60507/FK2/OBIGQH/G8LVR9
10.60507/FK2/OBIGQH/RISO8C
10.60507/FK2/OBIGQH/VLQRE6
10.60507/FK2/OBIGQH/IBDRTC
10.60507/FK2/OBIGQH/SJPKRF
10.60507/FK2/OBIGQH/CIJMFP
10.60507/FK2/OBIGQH/DH9AAM
10.60507/FK2/OBIGQH/AUWAS4
10.60507/FK2/OBIGQH/CFO9WK
10.60507/FK2/OBIGQH/NVCYER
10.60507/FK2/OBIGQH/OKTVVY
10.60507/FK2/OBIGQH/3ARJS6
10.60507/FK2/OBIGQH/GKEWC1
10.60507/FK2/OBIGQH/NKMETW
10.60507/FK2/OBIGQH/6QMVCH
10.60507/FK2/OBIGQH/GHJ7NA
10.60507/FK2/OBIGQH/ASHURM
10.60507/FK2/OBIGQH/DAHAXA
10.60507/FK2/OBIGQH/QWTX5L
10.60507/FK2/OBIGQH/BFT9W3
10.60507/FK2/OBIGQH/U0TBJK
10.60507/FK2/OBIGQH/MV1LOQ
10.60507/FK2/OBIGQH/QGR4K0
10.60507/FK2/OBIGQH/MXTVWT
10.60507/FK2/OBIGQH/RPY7CS
10.60507/FK2/OBIGQH/KCMONS
10.60507/FK2/OBIGQH/HNEXOC
10.60507/FK2/OBIGQH/KVRHLM
10.60507/FK2/OBIGQH/LKMCML
10.60507/FK2/OBIGQH/9P0YTO
10.60507/FK2/OBIGQH/I2SD7C
10.60507/FK2/OBIGQH/GFZIVI
10.60507/FK2/OBIGQH/4QPNIB
10.60507/FK2/OBIGQH/YMNZ0E
10.60507/FK2/OBIGQH/JYQV58
10.60507/FK2/OBIGQH/QAL9QI
10.60507/FK2/OBIGQH/KLTLAT
10.60507/FK2/OBIGQH/OINYH5
10.60507/FK2/OBIGQH/WTZQTN
10.60507/FK2/OBIGQH/BIQTV2
10.60507/FK2/OBIGQH/NP99O6
10.60507/FK2/OBIGQH/BMTHDE
10.60507/FK2/OBIGQH/V3QCJ1
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1.0
Creative Commons Attribution 4.0 International License.
This is a comprehensive collection of gene expression count tables in transcripts per million (TPMs) encompassing species from five domains of life - plants, fungi, animals, bacteria and archaea. This data publication is referenced and discussed in detail in the manuscript - “XpBrew and PanXpresso - automatic RNA-seq processing workflow and comprehensive collection of gene expression data”. This dataset contains the annotation files, and expression files bundled as a tarball per species. It also includes a detailed supplementary file that provides information on the data sources and quality of the datasets used in the study, along with a detailed taxonomic classification of the different species covered in the current collection.
XpBrew, v0.3
Coding (.cds.fasta), peptide (.pep.fasta), and count table (.tpms.tsv) are the three main files available in every species tarball. For some species, primary isoform retained coding (.repr.cds.fasta), peptide (.repr.pep.fasta) and count table (.repr.tpms.tsv), files have also been included.
README.txt has all the details on the investigators, and the list of files/ folders along with the methods
SuppFile01_PanXpresso_DataSources-Reference-Taxonomy.tsv has the data sources and references for the datasets processed in this study