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Part 1: Document Description
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Citation |
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Title: |
Supplementary Data to the study on Candidate gene prediction for drought adaptation in Brassicaceae species |
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Identification Number: |
doi:10.60507/FK2/JBUJFW |
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Distributor: |
bonndata |
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Date of Distribution: |
2025-01-06 |
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Version: |
1 |
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Bibliographic Citation: |
Uebermuth-Feldhaus, Carolin, 2025, "Supplementary Data to the study on Candidate gene prediction for drought adaptation in Brassicaceae species", https://doi.org/10.60507/FK2/JBUJFW, bonndata, V1 |
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Citation |
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Title: |
Supplementary Data to the study on Candidate gene prediction for drought adaptation in Brassicaceae species |
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Subtitle: |
Raw results of the prediction of candidate genes for drought adaptation and results of the prediction of diversifying selection. |
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Identification Number: |
doi:10.60507/FK2/JBUJFW |
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Authoring Entity: |
Uebermuth-Feldhaus, Carolin (University of Bonn) |
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Other identifications and acknowledgements: |
Schoof, Heiko |
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Software used in Production: |
A2TEA.Workflow |
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Software used in Production: |
R |
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Software used in Production: |
snakemake |
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Distributor: |
bonndata |
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Access Authority: |
Uebermuth-Feldhaus, Carolin |
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Depositor: |
Uebermuth-Feldhaus, Carolin |
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Date of Deposit: |
2024-09-17 |
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Holdings Information: |
https://doi.org/10.60507/FK2/JBUJFW |
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Study Scope |
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Keywords: |
Agricultural Sciences, Medicine, Health and Life Sciences |
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Abstract: |
Contains the raw results of the gene family prediction and their differential expression under drought in the Brassicaceae species Eutrema salsugineum, Arabidopsis lyrata, Arabidopsis thaliana and Brassica napus, including phylogenetic trees for expanded gene families. It contains a table of all Conserved gene families with their respective genes. It also contains the raw results from the prediction of diversifying selection in all gene families. |
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Date of Collection: |
2022-2024 |
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Kind of Data: |
qualitative |
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Kind of Data: |
quantitative |
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Kind of Data: |
R code |
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Kind of Data: |
csv |
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Kind of Data: |
RData |
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Notes: |
The research article is not yet published. The relation to the publication will be added upon publication of the research article. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Materials |
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https://doi.org/10.12688/f1000research.126463.2 https://doi.org/10.5281/zenodo.14540009 |
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Label: |
A2TEA_finished.RData |
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Text: |
the raw results from the A2TEA.Workflow |
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Notes: |
application/x-rlang-transport |
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Label: |
Conserved_dataset_matrix.tsv |
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Text: |
a table of all conserved gene families and the respective genes of the four species |
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Notes: |
text/tsv |
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Label: |
OGs_pos_selection_pvalues.tsv |
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Text: |
a table with the p-values of the test for diversifying selection for all tested genes |
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Notes: |
text/tsv |
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Label: |
Uebermuth-Feldhaus_Readme.txt |
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Notes: |
text/plain |