Data for Modeling the potential distribution of Wesselsbron, Sindbis, and Middelburg viruses and their vectors in Africa under future climatic and land-use changes (doi:10.60507/FK2/LA6LJW)

View:

Part 1: Document Description
Part 2: Study Description
Part 5: Other Study-Related Materials
Entire Codebook

Data for Modeling the potential distribution of Wesselsbron, Sindbis, and Middelburg viruses and their vectors in Africa under future climatic and land-use changes

doi:10.60507/FK2/LA6LJW

bonndata

2025-06-13

1

Nabatanzi, Maureen, 2025, "Data for Modeling the potential distribution of Wesselsbron, Sindbis, and Middelburg viruses and their vectors in Africa under future climatic and land-use changes", https://doi.org/10.60507/FK2/LA6LJW, bonndata, V1

Data for Modeling the potential distribution of Wesselsbron, Sindbis, and Middelburg viruses and their vectors in Africa under future climatic and land-use changes

doi:10.60507/FK2/LA6LJW

Nabatanzi, Maureen (University of Bonn)

Selina Graff

R

Project number 458328858

bonndata

Nabatanzi, Maureen

Nabatanzi, Maureen

2025-04-09

https://doi.org/10.60507/FK2/LA6LJW

Agricultural Sciences, Earth and Environmental Sciences, Medicine, Health and Life Sciences

This dataset comprises ecological variables and species presence points used to model the current and future potential distribution of Wesselsbron, Sindbis, and Middelburg viruses and five mosquito vectors (Aedes circumluteolus, Aedes mcintoshi, Culex univittatus, Culex pipiens and Mansonia Africana). Ecological data include 19 Bioclimatic variables, Normalized Difference Vegetation Index, Built-Up areas, Settlement model grid, Human population, Forested areas, Livestock density, and Croplands. Two time periods were selected, current (reference year 2015) and future (2021 – 2040); current bioclimatic comprised data collected over 1970 – 2000. For the future, we utilized the Intergovernmental Panel on Climate Change’s Shared Socioeconomic Pathways (SSPs), which are projections of future greenhouse gas emissions and climate. We chose SSP2-4.5 for moderate and SSP5-8.5 for severe conditions. Based on the Coupled Model Intercomparison Project Phase 6, we selected two Global Climate Models (GCM), IPSL - CM6A - LR and HadGEM - GC31 – LL. Therefore, per GCM, we extracted ecological data for the two SSPs for the period 2021 – 2040. Presence points comprise coordinates of locations of samples from which the species were previously identified.

1954-01-01-2024-09-19

1954-01-01-2024-09-19

Coordinates

Raster images

Global land use for 2015–2100 at 0.05° resolution under diverse socioeconomic and climate scenarios. doi:10.1038/s41597-020-00669-x

Coupled Model Intercomparison Project Phase 6 (CMIP6), Future climate, 30 seconds spatial resolution. https://www.worldclim.org/data/cmip6/cmip6_clim30s.html

MODIS/Terra Vegetation Indices Monthly L3 Global 1km SIN Grid V061. Fick, S. E., & Hijmans, R. J. (2017).

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. 37(12), 4302-4315. doi:https://doi.org/10.1002/joc.5086

MODIS/Terra+Aqua Land Cover Type Yearly L3 Global 500m SIN Grid V061. https://doi.org/10.5067/MODIS/MCD12Q1.061

Global Human Settlement Layer: Population and Built-Up Estimates, and Degree of Urbanization Settlement Model Grid. https://doi.org/10.7927/h4154f0w

GLW 4: Gridded Livestock Density (Global - 2015 - 10 km) [mapDigital]. https://data.apps.fao.org/catalog/iso/15f8c56c-5499-45d5-bd89-59ef6c026704

GLW 4: Gridded Livestock Density (Global - 2020 - 10 km) [mapDigital]. https://data.apps.fao.org/catalog/iso/9d1e149b-d63f-4213-978b-317a8eb42d02

Global maps of cropland extent and change show accelerated cropland expansion in the twenty-first century. doi:10.1038/s43016-021-00429-z

Wang, X., Meng, X., & Long, Y. (2022). Projecting 1 km-grid population distributions from 2020 to 2100 globally under shared socioeconomic pathways. In: figshare.

National Center for Biotechnology Information, NCBI Virus [Internet]. National Library of Medicine. 2024. Available from: https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide.

Free to access and download

Label:

AeCirc_17May24.csv

Text:

Presence points for Aedes circumluteolus

text/csv

Label:

AeMc_17May24.csv

Text:

Presence points for Aedes mcintoshi

text/csv

Label:

Bio1.asc

Text:

Annual mean temperature (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio10.asc

Text:

Mean Temperature of Warmest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio10_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio10_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio10_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio10_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio11.asc

Text:

Mean Temperature of Coldest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio11_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio11_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio11_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio11_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio12.asc

Text:

Annual Precipitation (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio12_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio12_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio12_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio12_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio13.asc

Text:

Precipitation of Wettest Month (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio13_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio13_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio13_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio13_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio14.asc

Text:

Precipitation of Driest Month (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio14_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio14_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio14_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio14_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio15.asc

Text:

Precipitation Seasonality (Coefficient of Variation) (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio15_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio15_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio15_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio15_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio16.asc

Text:

Precipitation of Wettest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio16_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio16_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio16_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio16_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio17.asc

Text:

Precipitation of Driest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio17_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio17_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio17_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio17_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio18.asc

Text:

Precipitation of Warmest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio18_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio18_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio18_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio18_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio19.asc

Text:

Precipitation of Coldest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio19_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio19_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio19_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio19_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio1_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio1_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio1_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio1_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio2.asc

Text:

Mean Diurnal Range (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio2_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio2_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio2_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio2_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio3.asc

Text:

Isothermality (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio3_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio3_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio3_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio3_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio4.asc

Text:

Temperature Seasonality (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio4_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio4_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio4_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio4_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio5.asc

Text:

Maximum Temperature of Warmest Month (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio5_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio5_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio5_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio5_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio6.asc

Text:

Minimum Temperature of Coldest Month (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio6_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio6_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio6_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio6_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio7.asc

Text:

Temperature Annual Range (Bio5-Bio6) (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio7_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio7_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio7_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio7_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio8.asc

Text:

Mean Temperature of Wettest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio8_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio8_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio8_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio8_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio9.asc

Text:

Mean Temperature of Driest Quarter (1970 - 2000) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio9_245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio9_585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio9_585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Bio9_SSP245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Built.asc

Text:

Built-up areas (2014). Proportion of the building footprint area within the total size of the grid cell. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Cropland.asc

Text:

Cropland (2012-2015). Pixel value: 0-100, percent of croplands per pixel. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Cropland_ssp245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Cropland_ssp245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Cropland_ssp585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Cropland_ssp585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

culexP_19Sept24.csv

Text:

Presence points for Culex pipiens

text/csv

Label:

culexU_2Aug24.csv

Text:

Presence points for Culex univittatus

text/csv

Label:

Data_sources_references.docx

Text:

References for data sources

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

Forest.asc

Text:

Forested areas (2015) Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Forest_ssp245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Forest_ssp245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Forest_ssp585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Forest_ssp585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Hpop.asc

Text:

Human population distribution indicated by number of people per grid cell. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Hpop_SSP2_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Hpop_SSP5_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Livestock.asc

Text:

Livestock density (2015). The following species: cattle, sheep, goats, horses, pigs and chicken. Absolute number of animals per pixel. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Livestock_2020.asc

Text:

Livestock density (2020) Animals or birds/pixel Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

manAfr_6Aug24.csv

Text:

Presence points for Mansonia africana

text/csv

Label:

Midv_5Aug24.csv

Text:

Presence points for Middelburg virus

text/csv

Label:

NDVI.asc

Text:

Normalized Difference Vegetation Index (NDVI) (2015). NDVI values range from -0.2 to 1. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

ReadMe.txt

Text:

Metadata file

text/plain

Label:

Sinv_31July24.csv

Text:

Presence points for Sindbis virus

text/csv

Label:

Smod.asc

Text:

Settlement Model Grid or Degree of Urbanization (2015). Grid cells are assigned with 2-digit codes in the following classes: 30 = "Urban Centre" density of at least 1,500 inhabitants per square km; 23 = "Dense Urban Cluster" density of at least 1,500 inhabitants per square km; 22 = "Semi-dense Urban Cluster" density of at least 300 inhabitants per square km; 21 = "Suburban or peri-urban grid cells" all other cells of the Urban domain; 13 = "Rural cluster" density of at least 300 inhabitants per square km; 12 = "Low Density Rural grid cells" density of at least 50 inhabitants per square km; 11 = "Very low density rural grid cells" density of less than 50 inhabitants per square km; 10 = "Water grid cells" more than 0.5 share covered by permanent surface water. Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Urban_ssp245_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Urban_ssp245_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Urban_ssp585_hadgem_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Urban_ssp585_ipsl_2040.asc

Text:

Raw data is referenced in ReadMe.txt

text/x-fixed-field

Label:

Wslv_5June24.csv

Text:

Presence points for Wesselsbron virus

text/csv